CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 7.417e-67
Identity = 129/211 (61.14%), Postives = 162/211 (76.78%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVL+YGPPGTGKTL ARAVA+ TD  F+RV GSELVQKY+GEG+RMVR+LF MAR     IIF DE+D+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD ALLRPGR+DRK+EF  P+ E R  I  IH++ M+  R I  + +A     ++GA++++VCTEAGMFA+R RR  V+++DF  A+ KV+K
Sbjct:  204 PKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIK 413          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.265e-66
Identity = 124/223 (55.61%), Postives = 175/223 (78.48%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RLDILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF  A+ K+  K+ + +  + +L
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAITKITGKKEKCSYDMPQL 402          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 2.158e-66
Identity = 126/215 (58.60%), Postives = 170/215 (79.07%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A E +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  227 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKE 440          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.158e-66
Identity = 125/215 (58.14%), Postives = 170/215 (79.07%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  222 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKE 435          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 123/223 (55.16%), Postives = 176/223 (78.92%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RL+ILKIH+ +MNL +G+DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF  A++K+  K+ + +  + +L
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITGKKEKCSYDMPQL 402          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 125/209 (59.81%), Postives = 165/209 (78.95%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKGVLLYGPPGTGKTLLARAVAH T+  F+RV GSELVQKYIGEG+R+VRELF +A++ APSIIF+DEID+IG+ R +S + +GD EVQRT+++LL ++DGF+    +K++ ATNRIDILD+ALLRPGR DR IE P P+ + RL ILKIH++ MN+   ++L +++    G +GA+L+A+C EAGMFA+R  R  V  EDF  A+ K+
Sbjct:  187 PKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGARLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTT-SGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAIDKL 394          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 127/208 (61.06%), Postives = 159/208 (76.44%), Query Frame = -3
Query:  252 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 875
            PKGVLLYGPPGTGKTLLA+AVAH T   F+   GSELVQKYIGEG+R+VRELF +A+E APSI+F+DEID+IG++R E+ + +GD EVQRT+++LL  +DGFE    +K++ ATNRIDILD ALLRPGR DR IE P P+ E R  ILK+H+R MNL   +DL ++A    G +GAEL A+C EAGMFA+R+    V QEDF  A+ K
Sbjct:  187 PKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMT-SGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDFLTALNK 393          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.818e-66
Identity = 125/215 (58.14%), Postives = 170/215 (79.07%), Query Frame = -3
Query:  231 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV GSEL+QKY+G+G ++VRELF +A + +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  222 PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKE 435          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.200e-66
Identity = 122/223 (54.71%), Postives = 176/223 (78.92%), Query Frame = -3
Query:  207 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKL 875
            PKGVLLYGPPGTGKTLLA+AVA+ T+ +F+RV GSELV+K+IGEG+++VR++F +A+E +P IIF+DEID++ S R ES +G GD EVQRT+++LL ++DGF++   +K++ ATNR DILD A+LRPGR DR IE   P+E+ RL+ILKIH+ +MNL + +DL+++A+      GA+LKAVCTEAGMFA+RE R  +  +DF+ A++K+  K+ + +  + +L
Sbjct:  182 PKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFKLAKEKSPCIIFIDEIDAVASKRTESLTG-GDREVQRTLMQLLAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KNVDLREVAKLAENMVGADLKAVCTEAGMFAIREEREFIKMDDFKEAISKITGKKEKCSYDMPQL 402          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.114e-65
Identity = 125/209 (59.81%), Postives = 156/209 (74.64%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKG LL+GPPGTGKTLLARAVA   DC F++V  S +V KYIGE +RM+RE+F  AR+H P I+FMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF++  K+KV+MATNR D LD ALLRPGR+DRKIE   PNE+SRL+ILKIHS ++     ID + + +  +G S A+L+ VCTEAGMFA+R  R  V  EDF  AV KV
Sbjct:  184 PKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKV 391          

HSP 2 Score: 23.0978 bits (48), Expect = 1.114e-65
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  862 ELFESLGIAQPXGCI 906
            ELF+ +GI  P GC+
Sbjct:  174 ELFKRVGITPPKGCL 188          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PRS7_DICDI7.417e-6761.1426S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR_METM51.265e-6655.61Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS4_ORYSJ2.158e-6658.6026S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4B_ARATH2.158e-6658.1426S proteasome regulatory subunit 4 homolog B OS=A... [more]
PSMR_METMP2.818e-6655.16Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METMJ2.818e-6659.81Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METHJ2.818e-6661.06Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS4A_ARATH2.818e-6658.1426S proteasome regulatory subunit 4 homolog A OS=A... [more]
PSMR_METM78.200e-6654.71Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS10_CAEEL1.114e-6559.81Probable 26S protease regulatory subunit S10B OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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