CX069559

Overview
NameCX069559
Unique NameCX069559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 1.184e-64
Identity = 121/213 (56.81%), Postives = 165/213 (77.46%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVLLYGPPGTGKTL+ARA A  T+ TF++++G +LVQ +IG+G+++VR+ F++A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K+
Sbjct:  204 PKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFLLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 415          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.184e-64
Identity = 131/211 (62.09%), Postives = 160/211 (75.83%), Query Frame = -3
Query:  243 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 875
            PKGVL YGPPG+GKTL+ARAVA+ T   FIRV GSELVQKYIGEG+RMVRELF MAR     I+F DEID+IG AR + G G+ D+EVQRTMLE+L QLDGF+A   IKVLMATNR DILD ALLRPGR+DRK+EF  P+ E R  I KIH+R M+  R I  + +A     ++GA++++VC EAGM+A+  RR  VT++DF  AV KV+K
Sbjct:  239 PKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGS-DNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVK 448          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.546e-64
Identity = 120/213 (56.34%), Postives = 164/213 (77.00%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF+ + ++KV+ ATNR+DILD ALLR GR+DRKIEFP PNEE+R  I++IHSR+MN+   ++ +++A   +  +GA+ KAVC EAGM ALR     +T ED+   + +V  K+
Sbjct:  220 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKK 431          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 1.546e-64
Identity = 120/213 (56.34%), Postives = 164/213 (77.00%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF+ + ++KV+ ATNR+DILD ALLR GR+DRKIEFP PNEE+R  I++IHSR+MN+   ++ +++A   +  +GA+ KAVC EAGM ALR     +T ED+   + +V  K+
Sbjct:  220 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKK 431          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 2.020e-64
Identity = 129/219 (58.90%), Postives = 164/219 (74.89%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 875
            PKGVLLYG PGTGKTLLA+AVAH T+ TFIRV GSELVQKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R+ +  V  EDF  AV KV M  +T+K M
Sbjct:  193 PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKVSMAADTQKMM 410          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.445e-64
Identity = 128/219 (58.45%), Postives = 163/219 (74.43%), Query Frame = -3
Query:  222 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 875
            PKGVLLYG PGTGKTLLA+AVAH T+ TFIRV GSELVQKYIG+GS++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R  +  V  E+F  AV KV M  +T+K M
Sbjct:  193 PKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKVSMAADTQKMM 410          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.445e-64
Identity = 118/216 (54.63%), Postives = 164/216 (75.93%), Query Frame = -3
Query:  228 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 875
            PKGVL+YGPPGTGKTL+ARA A  T+ TF++++G +LVQ YIG+G+R+VR+ F +A+E  P+IIF+DEID+IG+ R +S    GD EVQRTMLELLNQLDGF +S ++K++ ATNR+DILD ALLR GR+DRKIEFP PN   R  IL+IH+R+M++   ++  ++A    G +GA+ KAVC EAGM ALR+ +  ++Q DF   + +V+ ++  K
Sbjct:  182 PKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQ-TGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRILQIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQNDFMDGIQEVLSRKKSK 396          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.877e-64
Identity = 120/213 (56.34%), Postives = 163/213 (76.53%), Query Frame = -3
Query:  237 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 875
            PKGVL+YGPPGTGKTLLARA A  T  TF++++G +LVQ +IG+G+++VR+ F +A+E APSIIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF+ + ++KV+ ATNR+DILD ALLR GR+DRKIEFP PNEE+R  I++IHSR+MN+   ++ +++A   +  +GA+ KAVC EAGM ALR     +T ED    + +V  K+
Sbjct:  223 PKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEVQAKK 434          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.877e-64
Identity = 126/209 (60.29%), Postives = 158/209 (75.60%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKGV+LYG PGTGKTLLA+AVA+ T  TF+RV G+EL+Q+Y+GEG ++VRELF +A  HAPSIIF+DEID+IG  R  + SG G  EVQRTMLELLNQLDGF+  N IKV+MATN+I+ LD AL+RPGRIDRKIEF  P+  ++  I  IH+ RM L   ++++ +       SGA++KA+CTEAGM ALRERR  VT +DF  A  KV
Sbjct:  203 PKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGKRYNTSSG-GRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDFISAREKV 410          
BLAST of CX069559 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 5.972e-64
Identity = 122/209 (58.37%), Postives = 155/209 (74.16%), Query Frame = -3
Query:  249 PKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 875
            PKG LLYGPPGTGKTLLARAVA   DC F++V  S +V KYIGE +R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L+ VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  167 PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          

HSP 2 Score: 23.0978 bits (48), Expect = 5.972e-64
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = -2
Query:  862 ELFESLGIAQPXGCI 906
            ELF+ +GI  P GC+
Sbjct:  157 ELFQRVGIIPPKGCL 171          
The following BLAST results are available for this feature:
BLAST of CX069559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 389
Match NameE-valueIdentityDescription
PS6AB_ARATH1.184e-6456.8126S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS7B_ARATH1.184e-6462.0926S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS6A_RAT1.546e-6456.3426S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN1.546e-6456.3426S protease regulatory subunit 6A OS=Homo sapiens... [more]
PSMR_METAC2.020e-6458.90Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMA3.445e-6458.45Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS6A_ENCCU3.445e-6454.6326S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS6A_MOUSE5.877e-6456.3426S protease regulatory subunit 6A OS=Mus musculus... [more]
PRS4_ENCCU5.877e-6460.2926S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS10_SPETR5.972e-6458.3726S protease regulatory subunit S10B OS=Spermophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11C09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11C09-F17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069559 ID=CX069559; Name=CX069559; organism=Citrus sinensis; type=EST; length=907bp
CTTGCATGCGAATTTAAATTTAGATAAAATAGATTGCAAATTTGTTTATC
ATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCTAAAAGGGCCTA
TCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAGGACTACTTGAA
TCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACATGGAAATGATTA
CTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTCTTTCTTCATGA
CCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACATGGATCCTTCTC
TCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCCTTAAGCTCCGC
ACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAAATCAATGCCAC
GCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATATCAAGACGAGAC
TCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATTCGTCCTGGCCT
GAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGCCATGAGAACCT
TAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGAGCAGCTCCAGC
ATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCAGATTCCATTCG
GGCAGATCCGATACTGTCAATTTCATCCATAAAAATGATAGACGGAGCAT
GTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTGGAGCCTTCTCCA
ATGTATTTCTGGACTAATTCAGAACCAGAAACCCTGATGAAAGTACAATC
AGTATGATGAGCCACAGCTCTAGCCAACAGTGTTTTGCCAGTACCAGGTG
GTCCATATAGCAATACACCCTTNGGGTTGAGCTATTCCAAGAGACTCGAA
CAATTCG
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