DR403912

Overview
NameDR403912
Unique NameDR403912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.029e-36
Identity = 74/188 (39.36%), Postives = 114/188 (60.64%), Query Frame = 2
Query:   11 SPVFIAATFMEQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            S + IAA   E+  I P     S+L+E    ++C YED T+WGK++GW+Y   TED++TGF++H  GW S+YC     AF+G+APINL++RL Q+LRW+ G +E+  S +CP+  G   RL  ++R+AYIN   YP+TSV L+ Y   P   +    F I +      ++ +++       G++EI+W
Sbjct:  523 SSIPIAAN-QERSIISPPALEESILQELSDAMACAYEDGTDWGKDVGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG--RRLNFMQRIAYINMTGYPVTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKW 707          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.827e-35
Identity = 70/164 (42.68%), Postives = 107/164 (65.24%), Query Frame = 2
Query:   83 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            + EA+ V +  YE KT WG +IGW+YG+VTED++TG++MH +GW S YC     AF G+APINL++RL QVLRW+ G +EI  SR+ P++   +  L  L+R+AYIN   YP T++ LI Y T+PA   +T  FI+   +    ++  ++  ++    +LE++W
Sbjct:  605 IAEAVMVTAAAYEKKTGWGSDIGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLF--GSTFLHPLQRVAYINITTYPFTALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKW 766          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.032e-34
Identity = 65/165 (39.39%), Postives = 106/165 (64.24%), Query Frame = 2
Query:   83 LKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTN-KFIIPEISNFASMWFILLFISIFATGILEIRW 574
            + E   V++C YED TEWG  +GW+Y   TED++TGF++H +GW S+YC     AF+G+APINL++RL Q+LRW+ G +E+  SR+CP+  G   RL+ ++R+AY N   YP++++ ++ Y  LP   L  + +F I +  +    + + +   I   G++EI+W
Sbjct:  534 MAEVEEVMTCAYEDGTEWGDGVGWVYDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAGC--RLRPMQRVAYANMTAYPVSALFMVVYDLLPVIWLSHHGEFHIQKPFSTYVAYLVAVIAMIEVIGLVEIKW 696          

HSP 2 Score: 26.1794 bits (56), Expect = 2.032e-34
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 1
Query:  580 GLVFEDWWRNEQ 615
            GL   DWWRNEQ
Sbjct:  698 GLTLLDWWRNEQ 709          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 62/178 (34.83%), Postives = 102/178 (57.30%), Query Frame = 2
Query:   41 EQGGIPPTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            E+   PP     S+ ++   V +CGY+  T WG++ GW+Y   TED+ TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ G +E+  S    +  G   RL  L+R+AY+N   YP+ +V +  Y   P   L++ ++ I +      ++ + +   I   G+ E++W
Sbjct:  543 ERSITPPVAIDGSVARDLAAVTACGYDLGTSWGRDAGWVYDIATEDVATGFRMHQQGWRSVYTSMEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRIAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQQPFGEYLLYLVAIIAMIHVIGMFEVKW 718          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 65/195 (33.33%), Postives = 110/195 (56.41%), Query Frame = 2
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            G S  F+  T ++      +  P ++L E++      + +C YED T WG+++GW+Y   TED++TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ G +E+  S    +  G   RL  L+R+AY+N   YP+ +V +  Y   P   L++ ++ I        ++ + +   I   G+ E++W
Sbjct:  518 GSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKW 709          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.754e-31
Identity = 65/195 (33.33%), Postives = 110/195 (56.41%), Query Frame = 2
Query:    5 GQSPVFIAATFMEQGGIPPTTNPASLLKEAIH-----VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            G S  F+  T ++      +  P ++L E++      + +C YED T WG+++GW+Y   TED++TGF+MH +GW S+Y      AF+G+APINL++RL Q+LRW+ G +E+  S    +  G   RL  L+R+AY+N   YP+ +V +  Y   P   L++ ++ I        ++ + +   I   G+ E++W
Sbjct:  488 GSSTSFVG-TMLDGANQERSITPLAVLDESVAGDLAALTACAYEDGTSWGRDVGWVYNIATEDVVTGFRMHRQGWRSVYASVEPAAFRGTAPINLTERLYQILRWSGGSLEMFFSHSNALLAG--RRLHPLQRVAYLNMSTYPIVTVFIFFYNLFPVMWLISEQYYIQRPFGEYLLYLVAVIAMIHVIGMFEVKW 679          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.240e-30
Identity = 60/158 (37.97%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  101 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            V+S  ++ +T+WGK +G+IY   TEDI+TGF++H +GW S+YC     AF G+APINL++RL+Q++RW+ G +E+  S + P+  G   RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W
Sbjct:  548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLMIILMIHMIGWLEIKW 703          

HSP 2 Score: 22.3274 bits (46), Expect = 1.240e-30
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  580 GLVFEDWWRNEQ 615
            G+ + D+WRNEQ
Sbjct:  705 GITWLDYWRNEQ 716          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.614e-30
Identity = 60/158 (37.97%), Postives = 103/158 (65.19%), Query Frame = 2
Query:  101 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRW 574
            V+S  ++ +T+WGK +G+IY   TEDI+TGF++H +GW S+YC     AF G+APINL++RL+Q++RW+ G +E+  S + P+  G   RL+ L+R++Y+N  +YP+TS+ ++ Y   P   L+ ++  I        ++ +++ + I   G LEI+W
Sbjct:  548 VVSASFDKETDWGKGVGYIYDIATEDIVTGFRIHGQGWRSMYCTMEHDAFCGTAPINLTERLHQIVRWSGGSLEMFFSHNNPLIGG--RRLQPLQRVSYLNMTIYPVTSLFILLYAISPVMWLIPDEVYIQRPFTRYVVYLLVIILMIHMIGWLEIKW 703          

HSP 2 Score: 22.3274 bits (46), Expect = 1.614e-30
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  580 GLVFEDWWRNEQ 615
            G+ + D+WRNEQ
Sbjct:  705 GITWLDYWRNEQ 716          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 2
Query:   59 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 565
            P  + +S ++ A  V +C Y+  T WG+E+GW+YGS+TEDILTG ++HA GW S+  +   PAF GSAPI     L Q  RWA G  EI++SR+ PI      RLK  + LAY+  + +PL +   + Y  L  +C+LTN+  +P+ S       + LFIS      +E
Sbjct:  431 PMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFME 599          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.918e-28
Identity = 68/169 (40.24%), Postives = 98/169 (57.99%), Query Frame = 2
Query:   59 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 565
            P  + +S ++ A  V +C Y+  T WG+E+GW+YGS+TEDILTG ++HA GW S+  +   PAF GSAPI     L Q  RWA G  EI++SR+ PI      RLK  + LAY+  + +PL +   + Y  L  +C+LTN+  +P+ S       + LFIS      +E
Sbjct:  431 PMVDISSRIEVAKAVSACNYDIGTCWGQEVGWVYGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFME 599          
The following BLAST results are available for this feature:
BLAST of DR403912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF8_ORYSJ2.029e-3639.36Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF6_ORYSJ3.827e-3542.68Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ2.032e-3439.39Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF4_ORYSJ9.754e-3134.83Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF2_ORYSJ9.754e-3133.33Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ9.754e-3133.33Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]
CSLF3_ORYSI1.240e-3037.97Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSJ1.614e-3037.97Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLH2_ORYSJ5.918e-2840.24Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI5.918e-2840.24Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403912 ID=DR403912; Name=DR403912; organism=Citrus sinensis; type=EST; length=617bp
GGGTGGTCAATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAG
GCATTCCACCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCAT
GTTATTAGTTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGG
ATGGATCTATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGC
ATGCTCGTGGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTT
AAGGGGTCTGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCG
ATGGGCCTTGGGGCCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATAT
GGTATGGCTACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATT
AACACTATTGTCTACCCACTGACCTCCGTCCCACTAATTGCTTACTGCAC
GCTTCCTGCTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAA
GCAACTTTGCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCT
ACTGGAATACTGGAGATTAGATGGAGGTGGGGTTGGTATTTGAGGACTGG
TGGAGGAATGAACAGTT
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