DR403912

Overview
NameDR403912
Unique NameDR403912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.364e-24
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 2
Query:   59 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPE 496
            P  + A+L++ A  V  C YE +T WG  +GW+Y SV ED  T   +H RGW S +  P  PAF GS P    + + Q  RWA G IE+L ++  P+  G+  ++K  +RLAY   ++  + S+P + YC LPA+CLL N  + P+
Sbjct:  422 PQKSLANLVEAAQEVGHCHYEYQTSWGN-LGWLYDSVAEDTNTSIGIHLRGWTSSFISPDPPAFLGSTPSVGPEAIVQHRRWATGSIEVLFNKQSPL-IGFRRKIKFRQRLAYF-WVLMCIRSIPELVYCLLPAYCLLNNSALFPK 564          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   59 PTTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFIS 541
            P  + +S ++ A  V SC YE  T WG E+GW YGS+TEDILTG ++HA GW S       PAF G AP      L Q  RWA G  EIL+S++ P+       L+  + LAY+   V+ +     + Y  L  +CLLTN+  + + S       + LF++
Sbjct:  462 PIVDISSHIEVAKEVSSCNYESGTHWGLEVGWAYGSMTEDILTGQRIHAAGWRSAKLETEPPAFLGCAPTGGPACLTQFKRWATGLFEILISQNNPLLLSIFKHLQFRQCLAYLTLYVWAVRGFVELCYELLVPYCLLTNQSFLSKASENCFNITLALFLT 622          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 54/160 (33.75%), Postives = 90/160 (56.25%), Query Frame = 2
Query:   86 KEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILE 565
            ++A  +++C YE +T+WG +IG  YG   EDI+TG  +H RGW S +  P R AF G AP  L+  + Q  RW+ G + I LS++C   +G+ G++KL  ++ Y    ++   S+P + Y  +P+  L+    + P+I +  +  FI +F      G+ E
Sbjct:  421 EKATSLVTCTYEHRTQWGNDIGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFGH-GKIKLQLQMGYCICGLWAANSLPTLYYVVIPSLGLVKGTPLFPQIMSPWATPFIYVFCVKTLYGLYE 579          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 55/150 (36.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   86 KEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILLF 535
            ++A  + +C YE +T+WG EIG  YG   ED++TG  +H RGW S+Y  P R AF G AP  L+  + Q  RW+ G   I LS+H    +G+ G++ L  ++ Y    ++   S+P I Y  +PA  L+    + PEI +  +  FI +F
Sbjct:  416 EKAKSLATCTYELRTQWGNEIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFGH-GKISLQLQMGYCIYGLWAANSLPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVF 564          
BLAST of DR403912 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  101 VISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGPIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSVPLIAYCTLPAFCLLTNKFIIPEISNFASMWFI 526
            +++C YE  T WG E G  YG   ED+ TG ++  RGW S+Y  P R  F G  P +L   L    RW  G ++I LSR+ P   G+ G++KL  ++ Y     + + S P + Y T+P+ C L    + PE +   S WFI
Sbjct:  433 LVTCTYEHNTIWGIEKGVRYGCPLEDVTTGLQIQCRGWRSVYYNPKRKGFLGMTPTSLGQILVLYKRWTEGFLQISLSRYSPFLLGH-GKIKLGLQMGYSVCGFWAVNSFPTLYYVTIPSLCFLNGISLFPEKT---SPWFI 570          
The following BLAST results are available for this feature:
BLAST of DR403912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB6_ARATH1.364e-2439.73Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLH3_ORYSJ1.155e-2337.89Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLE1_ORYSJ2.845e-2233.75Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE6_ORYSJ1.412e-2136.67Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE2_ORYSJ2.944e-1936.62Cellulose synthase-like protein E2 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403912 ID=DR403912; Name=DR403912; organism=Citrus sinensis; type=EST; length=617bp
GGGTGGTCAATCCCCAGTTTTCATTGCAGCTACCTTCATGGAACAGGGAG
GCATTCCACCGACAACTAATCCTGCAAGTCTTCTAAAGGAAGCAATCCAT
GTTATTAGTTGTGGTTATGAGGACAAGACTGAATGGGGCAAAGAGATTGG
ATGGATCTATGGTTCTGTGACTGAAGATATCCTGACTGGGTTCAAGATGC
ATGCTCGTGGTTGGATATCAATCTATTGCATGCCACCACGCCCAGCATTT
AAGGGGTCTGCTCCCATAAATCTTTCTGATCGTTTGAACCAGGTTCTTCG
ATGGGCCTTGGGGCCAATTGAGATTTTGCTGAGCAGGCATTGCCCTATAT
GGTATGGCTACAATGGGAGATTGAAGCTTTTGGAGAGACTGGCGTACATT
AACACTATTGTCTACCCACTGACCTCCGTCCCACTAATTGCTTACTGCAC
GCTTCCTGCTTTTTGCCTTCTTACTAATAAATTCATCATTCCAGAGATAA
GCAACTTTGCTAGCATGTGGTTTATTCTACTTTTCATTTCCATTTTTGCT
ACTGGAATACTGGAGATTAGATGGAGGTGGGGTTGGTATTTGAGGACTGG
TGGAGGAATGAACAGTT
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