CX069546
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSOB (Putative membrane protein ycf1 OS=Cuscuta obtusiflora GN=ycf1 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16 Identity = 70/283 (24.73%), Postives = 133/283 (47.00%), Query Frame = -1 Query: 5 SKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPI----------LITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQ--NGMQKNPVFFNNGKGGGRVLDKNKN 769 +K ++ +Q T + + + + + + N+E EN ++ K + K K + +ETE Q + F+K++L QLR G F++ ++Q+ C L+RL+N +++ +SIQR +++L I L ++ + E K + EP L + +G+F +YQ++ ++LVHK K + +G + + + +A H +PE IL +RRRELR L+C N K + G + F+ K ++ ++ K+ Sbjct: 1367 NKLSSQQQNQTTTKINTETKNQQKNRVENEENKETENQQNAETKNKQKSKTENEENKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQREKLNLHIMPEIGIKDLTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLIYQLLNMSLVHKIKYPTNNESRNQGVITTQKNNN-VASH---------------IPENILSSRRRRELRILMCLNKKKKKCKGTEATNKSFSYKKKCAKIWEEQKS 1631
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSGR (Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.004e-15 Identity = 69/256 (26.95%), Postives = 121/256 (47.27%), Query Frame = -1 Query: 92 SKEENELADQ-GTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELT-------------KGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFN 769 SK++N+ + T + QK S + N++ EN ++ K + K K + +ETE Q + F+K++L QLR G F++ ++Q+ C L+RL+N +++ +SIQR +++L I+ + +KELT K + EP L + +G+F +YQ++ ++LVH K + +G + + K+ M + +PE IL +RRRELR L+C N Sbjct: 1368 SKQQNQTTTKMNTETKNKQK-----SKVENEKNKKTENQQNAETKNKQKSKTENEGNKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQRQKLNLHIM---PEIGIKELTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLMYQLLNMSLVHNIKYPTNNESRNQGVITTQ-------KNNNMASH---------IPENILSSRRRRELRILMCLN 1597
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_OENEH (Putative membrane protein ycf1 OS=Oenothera elata subsp. hookeri GN=ycf1 PE=3 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 2.449e-13 Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = -1 Query: 8 IASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKN-DGQFFLYQIVGIALV-------HKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNS---KNQNGMQKNPVFFNNGKGGGRVLDKNK 457 ++SI+R + + A LT G + IEP R+S +N D F +YQ++ I+LV H + ++T++Y+ + ++F F+ K T +K+ DL VPETIL KRRRELR LI F S K +N + KNPVF+ K G V+D ++ Sbjct: 2263 LSSIKRERLKMEFSTRNNSLATIMLTHG-IFSIEPLRISRQNQDASFLIYQLIKISLVEQLDPYDHNDSFELTEKYRAR-----RNF--FMPKTNAET--MHKSDSDLFVPETILSTKRRRELRILISFYSRRGKRKNRIYKNPVFWKYVKNCGEVVDNSE 2413 The following BLAST results are available for this feature:
BLAST of CX069546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069546 ID=CX069546; Name=CX069546; organism=Citrus sinensis; type=EST; length=835bpback to top |