CX069546

Overview
NameCX069546
Unique NameCX069546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSOB (Putative membrane protein ycf1 OS=Cuscuta obtusiflora GN=ycf1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.062e-16
Identity = 70/283 (24.73%), Postives = 133/283 (47.00%), Query Frame = -1
Query:    5 SKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPI----------LITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQ--NGMQKNPVFFNNGKGGGRVLDKNKN 769
            +K  ++  +Q T + + + +    + + N+E    EN   ++ K + K K   +  +ETE Q             +  F+K++L  QLR  G   F++    ++Q+ C L+RL+N +++  +SIQR +++L I          L   ++  + E  K   +  EP  L +  +G+F +YQ++ ++LVHK K       + +G +  +  +  +A H               +PE IL  +RRRELR L+C N K +   G +     F+  K   ++ ++ K+
Sbjct: 1367 NKLSSQQQNQTTTKINTETKNQQKNRVENEENKETENQQNAETKNKQKSKTENEENKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQREKLNLHIMPEIGIKDLTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLIYQLLNMSLVHKIKYPTNNESRNQGVITTQKNNN-VASH---------------IPENILSSRRRRELRILMCLNKKKKKCKGTEATNKSFSYKKKCAKIWEEQKS 1631          
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSGR (Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.004e-15
Identity = 69/256 (26.95%), Postives = 121/256 (47.27%), Query Frame = -1
Query:   92 SKEENELADQ-GTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELT-------------KGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFN 769
            SK++N+   +  T   + QK     S + N++    EN   ++ K + K K   +  +ETE Q             +  F+K++L  QLR  G   F++    ++Q+ C L+RL+N +++  +SIQR +++L I+    +  +KELT             K   +  EP  L +  +G+F +YQ++ ++LVH  K       + +G +  +       K+  M  +         +PE IL  +RRRELR L+C N
Sbjct: 1368 SKQQNQTTTKMNTETKNKQK-----SKVENEKNKKTENQQNAETKNKQKSKTENEGNKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQRQKLNLHIM---PEIGIKELTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLMYQLLNMSLVHNIKYPTNNESRNQGVITTQ-------KNNNMASH---------IPENILSSRRRRELRILMCLN 1597          
BLAST of CX069546 vs. ExPASy Swiss-Prot
Match: YCF1_OENEH (Putative membrane protein ycf1 OS=Oenothera elata subsp. hookeri GN=ycf1 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.449e-13
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = -1
Query:    8 IASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKN-DGQFFLYQIVGIALV-------HKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNS---KNQNGMQKNPVFFNNGKGGGRVLDKNK 457
            ++SI+R  + +         A   LT G +  IEP R+S +N D  F +YQ++ I+LV       H +  ++T++Y+ +     ++F  F+ K    T   +K+  DL VPETIL  KRRRELR LI F S   K +N + KNPVF+   K  G V+D ++
Sbjct: 2263 LSSIKRERLKMEFSTRNNSLATIMLTHG-IFSIEPLRISRQNQDASFLIYQLIKISLVEQLDPYDHNDSFELTEKYRAR-----RNF--FMPKTNAET--MHKSDSDLFVPETILSTKRRRELRILISFYSRRGKRKNRIYKNPVFWKYVKNCGEVVDNSE 2413          
The following BLAST results are available for this feature:
BLAST of CX069546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_CUSOB1.062e-1624.73Putative membrane protein ycf1 OS=Cuscuta obtusifl... [more]
YCF1_CUSGR2.004e-1526.95Putative membrane protein ycf1 OS=Cuscuta gronovii... [more]
YCF1_OENEH2.449e-1336.02Putative membrane protein ycf1 OS=Oenothera elata ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_11B12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-11B12-D23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069546 ID=CX069546; Name=CX069546; organism=Citrus sinensis; type=EST; length=835bp
CAAGATTTTTGTTTTTATCCAAAACGCGGCCGCCGCCCTTTCCGTTATTA
AAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTGAAACA
AATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGTTTCAG
GAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTTTTTGA
TGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCCTTTTC
TTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGCAATAC
CTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACAAACGA
CGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGAGCGAA
CTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTGAATAG
AGGCTATAGCAACGTCGCTAGGATTTATTAGTCGAACCAGGTGACAATAT
ACTTGCATATCATTGAGTATTTTTTCTCTGAAAGAAACAGCCCCCCTCCA
TCGCAACTGCAAACACAAATATCTTTTTAGGAAGAAATCGAGCTGTACTT
CGGTTTCTCTTTTGGATTGCTTTTTCTTTATACGGGTTTTCATGTCCGAT
CCCGTATAATTTTCTTCACCATCTTTTTCTTGGTTTGAGAGAACTGATCC
AAGAATTACTTGCTTTTGTGCATCCGATCTCGGAGTTCCTTGGTCTGCGA
GTTCGTTTTCTTCTTTACTTTGATTCGATAATTCAAAATATTCTTTTTGA
GTAGGTGATATAAAAAGATCCGCCTCTTTCTTTCC
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