DR403905

Overview
NameDR403905
Unique NameDR403905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CYAP7 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7424) GN=rplK PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.108e-45
Identity = 86/125 (68.80%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKA PAPPVGPALG  GVNIMAFCK+YN +T+D+ G VIPVEI+V++DRSFTF+LKTPPASVL+ KAAGVE+GS +P ++ VG IT +QLR IA  K+PDLN   IE+AM+I+AGTA NMGI +
Sbjct:   15 AGKANPAPPVGPALGQHGVNIMAFCKEYNGKTSDQVGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAGVERGSNEPNKKNVGSITQDQLREIAQTKMPDLNANDIEAAMKIVAGTARNMGISV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_SYNS9 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9902) GN=rplK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 89/126 (70.63%), Postives = 103/126 (81.75%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIM FCK+YNART DKAG VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS D  +  VG I+  QL  IA  KLPDLNC+S++SAMRII GTA NMG+ +
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMMFCKEYNARTQDKAGLVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGDSAKGSVGSISRAQLEEIAKTKLPDLNCSSVDSAMRIIEGTARNMGVAV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CYAA5 (50S ribosomal protein L11 OS=Cyanothece sp. (strain ATCC 51142) GN=rplK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 86/126 (68.25%), Postives = 105/126 (83.33%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIMAFCK+YNA+T+D+AG VIPVEI+V++DRSFTF+LKTPPASVL+ KAAG+EKGS  P  QKVG I+ +QL+ IA  K+PDLN   I++AM I+ GTA NMG+ I+
Sbjct:   15 AGKANPAPPVGPALGQHGVNIMAFCKEYNAKTSDQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAGIEKGSAQPNNQKVGSISRDQLKEIAQTKMPDLNANDIDAAMNIVEGTARNMGVTIN 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_PROM9 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.696e-45
Identity = 86/126 (68.25%), Postives = 105/126 (83.33%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YNA+T DKAG+VIPVEI+V++DRSFTFI KTPPA+VL+ KAAG++KGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTQDKAGFVIPVEISVFEDRSFTFITKTPPAAVLITKAAGIDKGSGESSKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_NOSP7 (50S ribosomal protein L11 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplK PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.696e-45
Identity = 88/125 (70.40%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKA PAPPVGPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+V++DRSFTF+LKTPPASVL+ KAA VEKGS +P ++KVG IT  QL+ IA  KLPDLN   I++AM+I+AGTA NMGI +
Sbjct:   15 AGKANPAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAKVEKGSNEPNKKKVGSITKAQLQEIAQTKLPDLNANDIDAAMKIVAGTAKNMGITV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_PORYE (50S ribosomal protein L11, chloroplastic OS=Porphyra yezoensis GN=rpl11 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.133e-45
Identity = 88/123 (71.54%), Postives = 103/123 (83.74%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 651
            AGKATPAPPVGPALG  GVNI+ FCK+YNARTADK+G VIPVEI++Y+DRSFTFILKTPPASVL+ KAAG+ KGS +P  +KVG IT +QL +IA  KLPDLN  +I  AM+I+ GTA NMGI
Sbjct:   15 AGKATPAPPVGPALGQHGVNIVMFCKEYNARTADKSGLVIPVEISIYEDRSFTFILKTPPASVLIAKAAGLNKGSGEPNTKKVGSITNKQLESIAETKLPDLNTNNIPQAMKIVGGTAKNMGI 137          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_PORPU (50S ribosomal protein L11, chloroplastic OS=Porphyra purpurea GN=rpl11 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 87/126 (69.05%), Postives = 105/126 (83.33%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKATPAPPVGPALG  GVNI+ FCK+YNARTADK G VIPVEI+VY+DRSF+FILKTPPASVL++KAAG+ KGS +P  +K+G IT +QL +IA  KLPDLN  ++  AM+I+ GTA NMGI I+
Sbjct:   15 AGKATPAPPVGPALGQHGVNIVMFCKEYNARTADKTGLVIPVEISVYEDRSFSFILKTPPASVLIVKAAGLNKGSGEPNIKKIGSITTKQLESIAETKLPDLNTNNLSQAMKIVGGTAKNMGILIE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THEP1 (50S ribosomal protein L11 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44
Identity = 85/125 (68.00%), Postives = 106/125 (84.80%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL+KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLMKAAGLEKGSSEPKRKIVGKVTRKQIEEIARTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOAB (50S ribosomal protein L11 OS=Clostridium acetobutylicum GN=rplK PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.366e-44
Identity = 86/125 (68.80%), Postives = 106/125 (84.80%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIMAFCK+YNA+TA++AG+ IPV ITVY DRSF+FILKTPPA+VL+ KAAG+E GS  P + KVGKIT EQ++ IA  K+PDLN  S+E+AM +IAGTA +MG+++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMAFCKEYNAKTANQAGFTIPVVITVYQDRSFSFILKTPPAAVLIKKAAGIESGSGVPNKNKVGKITKEQVKEIAQTKMPDLNAASLEAAMSMIAGTARSMGVEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_PROMT (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain NATL2A) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YN+RT DKAG+VIPVEI+V++DRSF+FI KTPPASVL+ KAAG+ KGS +  +   G I+  QL  IA  KLPDLNC+SIESAM++I GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNSRTQDKAGFVIPVEISVFEDRSFSFITKTPPASVLITKAAGIAKGSGESAKGSAGSISTSQLEEIAKTKLPDLNCSSIESAMKVIEGTAKNMGVSI 139          
The following BLAST results are available for this feature:
BLAST of DR403905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_CYAP72.108e-4568.8050S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_SYNS93.596e-4570.6350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_CYAA53.596e-4568.2550S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_PROM94.696e-4568.2550S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_NOSP74.696e-4570.4050S ribosomal protein L11 OS=Nostoc punctiforme (s... [more]
RK11_PORYE6.133e-4571.5450S ribosomal protein L11, chloroplastic OS=Porphy... [more]
RK11_PORPU1.046e-4469.0550S ribosomal protein L11, chloroplastic OS=Porphy... [more]
RL11_THEP11.366e-4468.0050S ribosomal protein L11 OS=Thermotoga petrophila... [more]
RL11_CLOAB1.366e-4468.8050S ribosomal protein L11 OS=Clostridium acetobuty... [more]
RL11_PROMT1.784e-4468.2550S ribosomal protein L11 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403905 ID=DR403905; Name=DR403905; organism=Citrus sinensis; type=EST; length=766bp
GGGGAGATTCAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTC
AACGAGTCTTCAAAATACTAATCAGCAGCTTTCGTGCTCTTTATTTCCTT
CAGCCGTCAACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGAC
AATAGAGTTAAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCAC
TGTCATTGCCATGGCTCCTCCTAAACTCGGTGGCAAAGCAAAAGCCAAGA
AAGTGGTGGGTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCT
GCGCCGCCCGTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGC
TTTTTGTAAGGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTA
TTCCAGTCGAAATTACTGTTTACGATGATAGGAGCTTCACTTTTATTCTT
AAGACGCCGCCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAA
GGGTTCAAAAGATCCAAAGCAACAGAAAGTGGGGAAGATCACCATTGAAC
AATTGCGGGCCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCT
ATTGAATCAGCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTAT
TGATATTGACCCTCCAGTTCTTGGGACCAAAAAGAAGGAACTTTGATTAT
TTCATTGTTGCCTTGATTTTGNNNNAGTTGTGGGGTTTAGCAGTCGCTTC
AAAGTTCATGATGTAC
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