DR403905

Overview
NameDR403905
Unique NameDR403905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_PROM1 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain NATL1A) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.784e-44
Identity = 86/126 (68.25%), Postives = 103/126 (81.75%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            +AGKA PAPPVGPALG  GVNIMAFCK+YN+RT DKAG+VIPVEI+V++DRSF+FI KTPPASVL+ KAAG+ KGS +  +   G I+  QL  IA  KLPDLNC+SIESAM++I GTA NMG+ I
Sbjct:   14 QAGKANPAPPVGPALGQHGVNIMAFCKEYNSRTQDKAGFVIPVEISVFEDRSFSFITKTPPASVLITKAAGIAKGSGESAKGSAGSISTSQLEEIAKTKLPDLNCSSIESAMKVIEGTAKNMGVSI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THESQ (50S ribosomal protein L11 OS=Thermotoga sp. (strain RQ2) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THEMA (50S ribosomal protein L11 OS=Thermotoga maritima GN=rplK PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_ACAM1 (50S ribosomal protein L11 OS=Acaryochloris marina (strain MBIC 11017) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 85/125 (68.00%), Postives = 104/125 (83.20%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKA PAPP+GPALG  GVNIM FCK+YNA+T+D+AG V+PVEI+VY+DRSFTFILKTPPASVL+ KAAG+EKGS +P   +VG+IT  QL+ IA  K+PDLN   IE+AM I+AGTA NMG+ +
Sbjct:   15 AGKANPAPPIGPALGQHGVNIMMFCKEYNAKTSDQAGLVVPVEISVYEDRSFTFILKTPPASVLIKKAAGIEKGSGEPNAVQVGQITKAQLQEIAQTKMPDLNANDIEAAMNIVAGTARNMGVAV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_FRASC (50S ribosomal protein L11 OS=Frankia sp. (strain CcI3) GN=rplK PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.044e-44
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIM FCK YNA T  +AG V+PVEITVYDDRSFTF+ KTPPA+ L+LKAAGVEKGS  P + KV K+T  Q+R IA  KLPDLN TSIE+A +IIAGTA +MGI +
Sbjct:   18 AGKATPAPPVGPALGQHGVNIMEFCKQYNAATESQAGNVVPVEITVYDDRSFTFVTKTPPAARLILKAAGVEKGSGTPHRDKVAKLTTAQIREIAQTKLPDLNATSIEAAEKIIAGTARSMGITV 142          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOB8 (50S ribosomal protein L11 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.192e-44
Identity = 85/127 (66.93%), Postives = 106/127 (83.46%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            +AGKATPAPPVGPALG  GVNIM FCK++NA+TA++AGY+IPV ITVY DRSF+FILKTPPA+VL+ K  G+E GS  P + KVGK+T +QL+ IA  K+PDLN  S+ESAMR+IAGTA +MG+ I+
Sbjct:   14 QAGKATPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGYIIPVVITVYQDRSFSFILKTPPAAVLIKKEIGLESGSGVPNKTKVGKLTQDQLKKIAETKMPDLNAASLESAMRMIAGTARSMGVTIE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THETN (50S ribosomal protein L11 OS=Thermoanaerobacter tengcongensis GN=rplK PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 89/125 (71.20%), Postives = 102/125 (81.60%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVG ALG  GVNIMAFCK++N RTA  AG +IPV IT+Y DRSF+FI KTPPASVLL KAAG+E GS  P +QKVGKIT +QLR IA  K+ DLN T IE+AMR+IAGTA +MGI+I
Sbjct:   15 AGKATPAPPVGTALGPHGVNIMAFCKEFNERTAKDAGLIIPVVITIYSDRSFSFITKTPPASVLLKKAAGIESGSPQPNKQKVGKITKQQLREIAEIKMRDLNTTDIEAAMRMIAGTARSMGIEI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THENN (50S ribosomal protein L11 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.973e-43
Identity = 84/125 (67.20%), Postives = 103/125 (82.40%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+E GS +PK++ VGK+T +Q+  IA  K+PDLN   +E+AMRII GTA +MGI++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIESGSSEPKRKIVGKVTRKQIEEIAKIKMPDLNANDLEAAMRIIEGTARSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLONN (50S ribosomal protein L11 OS=Clostridium novyi (strain NT) GN=rplK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.577e-43
Identity = 86/126 (68.25%), Postives = 105/126 (83.33%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKATPAPPVGPALG  GVNIMAFCK+YNA+TA++AG  IPV I+VY DRSF+FILKTPPA+VL+ KAAG++ GS +P + KVGKIT  QL+ IA  K+PDLN  S+ESAM +IAGTA +MGI ++
Sbjct:   15 AGKATPAPPVGPALGQHGVNIMAFCKEYNAKTANQAGMTIPVIISVYQDRSFSFILKTPPAAVLIKKAAGLDSGSGEPNKTKVGKITKAQLKEIAETKMPDLNAGSVESAMSMIAGTARSMGITVE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_ODOSI (50S ribosomal protein L11, chloroplastic OS=Odontella sinensis GN=rpl11 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.577e-43
Identity = 87/125 (69.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNI AFCK+YNA+T DK G +IPVEI+VY+DRS+TFILKTPPASVLL  AA ++KGS  P +  VG IT  QL  IA+ KLPDLN T I SAM+I+ GTA NMGI I
Sbjct:   15 AGKATPAPPVGPALGQHGVNIAAFCKEYNAKTTDKTGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKIKKGSSTPNRVNVGSITKSQLEEIASIKLPDLNTTKISSAMKIVEGTARNMGISI 139          
The following BLAST results are available for this feature:
BLAST of DR403905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_PROM11.784e-4468.2550S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_THESQ2.331e-4468.0050S ribosomal protein L11 OS=Thermotoga sp. (strai... [more]
RL11_THEMA2.331e-4468.0050S ribosomal protein L11 OS=Thermotoga maritima G... [more]
RL11_ACAM12.331e-4468.0050S ribosomal protein L11 OS=Acaryochloris marina ... [more]
RL11_FRASC3.044e-4471.2050S ribosomal protein L11 OS=Frankia sp. (strain C... [more]
RL11_CLOB85.192e-4466.9350S ribosomal protein L11 OS=Clostridium beijerinc... [more]
RL11_THETN1.511e-4371.2050S ribosomal protein L11 OS=Thermoanaerobacter te... [more]
RL11_THENN1.973e-4367.2050S ribosomal protein L11 OS=Thermotoga neapolitan... [more]
RL11_CLONN2.577e-4368.2550S ribosomal protein L11 OS=Clostridium novyi (st... [more]
RK11_ODOSI2.577e-4369.6050S ribosomal protein L11, chloroplastic OS=Odonte... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403905 ID=DR403905; Name=DR403905; organism=Citrus sinensis; type=EST; length=766bp
GGGGAGATTCAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTC
AACGAGTCTTCAAAATACTAATCAGCAGCTTTCGTGCTCTTTATTTCCTT
CAGCCGTCAACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGAC
AATAGAGTTAAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCAC
TGTCATTGCCATGGCTCCTCCTAAACTCGGTGGCAAAGCAAAAGCCAAGA
AAGTGGTGGGTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCT
GCGCCGCCCGTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGC
TTTTTGTAAGGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTA
TTCCAGTCGAAATTACTGTTTACGATGATAGGAGCTTCACTTTTATTCTT
AAGACGCCGCCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAA
GGGTTCAAAAGATCCAAAGCAACAGAAAGTGGGGAAGATCACCATTGAAC
AATTGCGGGCCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCT
ATTGAATCAGCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTAT
TGATATTGACCCTCCAGTTCTTGGGACCAAAAAGAAGGAACTTTGATTAT
TTCATTGTTGCCTTGATTTTGNNNNAGTTGTGGGGTTTAGCAGTCGCTTC
AAAGTTCATGATGTAC
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