DR403905

Overview
NameDR403905
Unique NameDR403905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOBM (50S ribosomal protein L11 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOBL (50S ribosomal protein L11 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOBK (50S ribosomal protein L11 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOBJ (50S ribosomal protein L11 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOBH (50S ribosomal protein L11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOB6 (50S ribosomal protein L11 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_CLOB1 (50S ribosomal protein L11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.670e-42
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + KV K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:   15 AGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_FUSNN (50S ribosomal protein L11 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplK PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42
Identity = 83/126 (65.87%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIM FCK +NA+T DKAG++IPVEI+VY DRSFTFILKTPPAS LL KAAG+  G+K+ K++  GKIT  +L+ +A  K+PDLN +S+E+AM+IIAG+A +MGI I+
Sbjct:   15 AGKANPAPPVGPALGQHGVNIMEFCKAFNAKTQDKAGWIIPVEISVYSDRSFTFILKTPPASDLLKKAAGITSGAKNSKKEVAGKITTAKLKELAETKMPDLNASSVETAMKIIAGSARSMGIKIE 140
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_THAPS (50S ribosomal protein L11, chloroplastic OS=Thalassiosira pseudonana GN=rpl11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42
Identity = 86/125 (68.80%), Postives = 98/125 (78.40%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GVNI AFCK+YNART +K G +IPVEI+VY+DRS+TFILKTPPASVLL  AA V+KGS  P +  VG +T  QL  IA  KLPDLN T I SA+RI+ GTA NMGI +
Sbjct:   15 AGKATPAPPVGPALGQHGVNIAAFCKEYNARTTEKMGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKVKKGSATPNRVNVGSVTKAQLEEIANIKLPDLNTTEISSAIRIVEGTARNMGITV 139
[Close]
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RK11_CYAPA (50S ribosomal protein L11, cyanelle OS=Cyanophora paradoxa GN=rpl11 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.181e-42
Identity = 85/125 (68.00%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GV+ + FCK+YNA+TADK G VIP EITVYDDRS++F+LKTPPASVL+ KAA VEKGS +P ++KVG IT  QL  IA  K PDLN  ++E+A RI+ GTA NMGI I
Sbjct:   15 AGKATPAPPVGPALGPYGVSSVNFCKEYNAKTADKGGLVIPAEITVYDDRSYSFVLKTPPASVLIAKAASVEKGSGEPNRKKVGSITKAQLEQIAKVKFPDLNTQNLEAASRIVEGTARNMGITI 139
The following BLAST results are available for this feature:
BLAST of DR403905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_CLOBM1.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBL1.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBK1.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBJ1.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBH1.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOB61.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOB11.670e-4266.6750S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_FUSNN2.181e-4265.8750S ribosomal protein L11 OS=Fusobacterium nucleat... [more]
RK11_THAPS2.181e-4268.8050S ribosomal protein L11, chloroplastic OS=Thalas... [more]
RK11_CYAPA2.181e-4268.0050S ribosomal protein L11, cyanelle OS=Cyanophora ... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403905 ID=DR403905; Name=DR403905; organism=Citrus sinensis; type=EST; length=766bp
GGGGAGATTCAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTC
AACGAGTCTTCAAAATACTAATCAGCAGCTTTCGTGCTCTTTATTTCCTT
CAGCCGTCAACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGAC
AATAGAGTTAAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCAC
TGTCATTGCCATGGCTCCTCCTAAACTCGGTGGCAAAGCAAAAGCCAAGA
AAGTGGTGGGTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCT
GCGCCGCCCGTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGC
TTTTTGTAAGGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTA
TTCCAGTCGAAATTACTGTTTACGATGATAGGAGCTTCACTTTTATTCTT
AAGACGCCGCCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAA
GGGTTCAAAAGATCCAAAGCAACAGAAAGTGGGGAAGATCACCATTGAAC
AATTGCGGGCCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCT
ATTGAATCAGCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTAT
TGATATTGACCCTCCAGTTCTTGGGACCAAAAAGAAGGAACTTTGATTAT
TTCATTGTTGCCTTGATTTTGNNNNAGTTGTGGGGTTTAGCAGTCGCTTC
AAAGTTCATGATGTAC
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