DR403905

Overview
NameDR403905
Unique NameDR403905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_BACA2 (50S ribosomal protein L11 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplK PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.860e-42
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIM FCK++NARTAD+AG +IPVEI+VY+DRSFTFI KTPPA+VLL KAAG+E GS +P + KV  +  +++R IA  K+PDLN   +E+AMR++ GTA +MGI I+
Sbjct:   15 AGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THERP (50S ribosomal protein L11 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplK PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 81/125 (64.80%), Postives = 103/125 (82.40%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG  GV IM F K+YN +TA  AG +IPV +T+Y+DRSFTF+LKTPPA+ LL +AAG+EKG+ DPK+QKVG++T EQ+R IA  K+PDLN   +E+AMR+I GTA +MGI++
Sbjct:   15 AGKATPAPPVGPALGQHGVPIMNFVKEYNEKTAHLAGQIIPVVVTIYEDRSFTFVLKTPPAADLLRRAAGIEKGAADPKRQKVGRVTREQIREIAQLKMPDLNARDLEAAMRMIEGTARSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THELT (50S ribosomal protein L11 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplK PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 80/125 (64.00%), Postives = 104/125 (83.20%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            AGKATPAPPVGPALG +GVNIM FCK +NA TADKAG ++PV ITVY+DRSF+F++KTPPAS LL +AAG+EKGS +PK++ VGK+T +QL  IA  K+PD+    +E+A++I+ GTA +MGI+I
Sbjct:   15 AGKATPAPPVGPALGQRGVNIMEFCKRFNAETADKAGMILPVIITVYEDRSFSFVVKTPPASFLLKRAAGLEKGSGEPKRKNVGKVTRKQLEEIAKIKMPDITANDLEAAVKIVEGTAKSMGIEI 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11A_BACCR (50S ribosomal protein L11-1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplK1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIM FCK++NARTAD+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + KV  +  +++R IA  K+PDLN  S+E+AMR++ G A +MGI I+
Sbjct:   15 AGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAASVEAAMRMVEGAARSMGIVIE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_THEM4 (50S ribosomal protein L11 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplK PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 84/126 (66.67%), Postives = 102/126 (80.95%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 657
            EAGKATPAPPVGPALG +GVN+M FCK +NA TADKAG +IPV ITVY+DRSFTFI KTPPAS LL KAA +  GS++PK++ VGK+T EQ++ IA  K  DLN   IE+AM+II GTA +MGI++
Sbjct:   14 EAGKATPAPPVGPALGQRGVNLMEFCKKFNAATADKAGMIIPVIITVYEDRSFTFITKTPPASFLLKKAAKLNSGSQEPKRKIVGKVTREQIKEIAEIKKEDLNANDIEAAMKIIEGTAKSMGIEV 139          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_STRVN (50S ribosomal protein L11 OS=Streptomyces violaceoruber GN=rplK PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 82/127 (64.57%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            +AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   17 QAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_STRLI (50S ribosomal protein L11 OS=Streptomyces lividans GN=rplK PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 82/127 (64.57%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            +AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   17 QAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_STRCO (50S ribosomal protein L11 OS=Streptomyces coelicolor GN=rplK PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 82/127 (64.57%), Postives = 101/127 (79.53%), Query Frame = 1
Query:  280 EAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            +AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   17 QAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_STAAW (50S ribosomal protein L11 OS=Staphylococcus aureus (strain MW2) GN=rplK PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + KV  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:   15 AGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
BLAST of DR403905 vs. ExPASy Swiss-Prot
Match: RL11_STAAT (50S ribosomal protein L11 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplK PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.289e-42
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1
Query:  283 AGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 660
            AGKA PAPPVGPALG  GVNIM FCK++NART D+AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAG+EKGS +P + KV  +T +Q+R IA  K+ DLN    E+AMRII GTA +MGI ++
Sbjct:   15 AGKANPAPPVGPALGQAGVNIMGFCKEFNARTQDQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGIEKGSGEPNKTKVATVTKDQVREIANSKMQDLNAADEEAAMRIIEGTARSMGIVVE 140          
The following BLAST results are available for this feature:
BLAST of DR403905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_BACA24.860e-4264.2950S ribosomal protein L11 OS=Bacillus amyloliquefa... [more]
RL11_THERP6.347e-4264.8050S ribosomal protein L11 OS=Thermomicrobium roseu... [more]
RL11_THELT6.347e-4264.0050S ribosomal protein L11 OS=Thermotoga lettingae ... [more]
RL11A_BACCR6.347e-4264.2950S ribosomal protein L11-1 OS=Bacillus cereus (st... [more]
RL11_THEM48.289e-4266.6750S ribosomal protein L11 OS=Thermosipho melanesie... [more]
RL11_STRVN8.289e-4264.5750S ribosomal protein L11 OS=Streptomyces violaceo... [more]
RL11_STRLI8.289e-4264.5750S ribosomal protein L11 OS=Streptomyces lividans... [more]
RL11_STRCO8.289e-4264.5750S ribosomal protein L11 OS=Streptomyces coelicol... [more]
RL11_STAAW8.289e-4265.8750S ribosomal protein L11 OS=Staphylococcus aureus... [more]
RL11_STAAT8.289e-4265.8750S ribosomal protein L11 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246K03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246K03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403905 ID=DR403905; Name=DR403905; organism=Citrus sinensis; type=EST; length=766bp
GGGGAGATTCAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTC
AACGAGTCTTCAAAATACTAATCAGCAGCTTTCGTGCTCTTTATTTCCTT
CAGCCGTCAACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGAC
AATAGAGTTAAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCAC
TGTCATTGCCATGGCTCCTCCTAAACTCGGTGGCAAAGCAAAAGCCAAGA
AAGTGGTGGGTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCT
GCGCCGCCCGTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGC
TTTTTGTAAGGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTA
TTCCAGTCGAAATTACTGTTTACGATGATAGGAGCTTCACTTTTATTCTT
AAGACGCCGCCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAA
GGGTTCAAAAGATCCAAAGCAACAGAAAGTGGGGAAGATCACCATTGAAC
AATTGCGGGCCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCT
ATTGAATCAGCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTAT
TGATATTGACCCTCCAGTTCTTGGGACCAAAAAGAAGGAACTTTGATTAT
TTCATTGTTGCCTTGATTTTGNNNNAGTTGTGGGGTTTAGCAGTCGCTTC
AAAGTTCATGATGTAC
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