DR403894

Overview
NameDR403894
Unique NameDR403894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            + I N++ CEG +RVERH  L +W +RF  +GF P  L    +NA +       L +    YRVEEN+G L LGW  R + T+SAWK
Sbjct:  491 KQICNLVACEGPDRVERHETLSQWANRFGSSGFAPAHLG---SNAFKQASMLLALFNGGEGYRVEENNGCLMLGWHTRPLITTSAWK 574          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R I N++ CEG +RVERH  L +WR R   +GF P  L          +L  +     YRVEENDG L LGW  R +  +SAWK
Sbjct:  491 RQICNVVACEGSDRVERHETLNQWRVRMNSSGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPLIATSAWK 574          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SLR1_ORYSJ (DELLA protein SLR1 OS=Oryza sativa subsp. japonica GN=SLR1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 36/84 (42.86%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R I N++ CEG ER ERH  LG+WR+R   AGF P  L          +L  +     YRVEE +G L LGW  R +  +SAW+
Sbjct:  538 RQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAGGDGYRVEEKEGCLTLGWHTRPLIATSAWR 621          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYD--SNYRVEENDGALYLGWRNRAMATSSAWK 246
            + I N++ CEG +RVERH  L +W +RF  +GF P  L          +L  ++    YRVEEN+G L L W  R + T+SAWK
Sbjct:  485 KQICNLVACEGPDRVERHETLSQWSNRFGSSGFAPAHLGSNAFKQASTLLALFNGGEGYRVEENNGCLMLSWHTRPLITTSAWK 568          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.608e-12
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK*KT 255
            + I N++ CEG +RVERH  L +W +RF  +G  P  L          +L  ++S   YRVEE++G L LGW  R + T+SAWK  T
Sbjct:  498 KQICNLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWKLST 584          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: GAI1_VITVI (DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.448e-12
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            + I N++ CEG ERVERH  L +WR+R   AGF P  L          +L  +     YRVEEN+G L LGW  R +  +SAW+
Sbjct:  492 QQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ 575          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.587e-12
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRD-----VLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK*KT 255
            + I N++ C+G +RVERH  L +WR+RF  AGF    +    +NA +       L +    YRVEE+DG L LGW  R +  +SAWK  T
Sbjct:  446 KQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIG---SNAFKQASMLLALFNGGEGYRVEESDGCLMLGWHTRPLIATSAWKLST 532          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.294e-11
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDS--NYRVEENDGALYLGWRNRAMATSSAWK 246
            + I N++ CEG +RVE H  L +WR+R   +GF P  L          +L  + S   YRVEEN+G+L LGW  R +  +SAWK
Sbjct:  494 KQICNVVACEGSDRVEWHETLTQWRTRLCSSGFEPIHLGSNAFKQASMLLALFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWK 577          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SLN1_HORVU (DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDY--DSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R I N++ CEG ER ERH  LG+WR+R   AGF    L          +L  +     Y+VEE +G L LGW  R +  +SAW+
Sbjct:  531 RQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAGGDGYKVEEKEGCLTLGWHTRPLIATSAWR 614          
BLAST of DR403894 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 RDIVNMLFCEGIERVERHXXLGKWRSRFMMAGFTPYRLSPLVTNAVRDVLKDYDSNYRVEENDGALYLGWRNRAMATSSAWK 246
            R +VN + CEGI+R+ER    GKWR R  MAGF    LS  +  +++         + V+E++G +  GW  RA+  +SAW+
Sbjct:  559 RKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRGNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640          
The following BLAST results are available for this feature:
BLAST of DR403894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RGA2_BRACM6.862e-1343.68DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
GAI_SOLLC8.962e-1344.05DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SLR1_ORYSJ1.170e-1242.86DELLA protein SLR1 OS=Oryza sativa subsp. japonica... [more]
RGA1_BRACM1.997e-1241.67DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGA_ARATH2.608e-1241.38DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]
GAI1_VITVI4.448e-1242.86DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 ... [more]
GAI_ARATH7.587e-1241.11DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
GAIPB_CUCMA1.294e-1141.67DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
SLN1_HORVU2.883e-1140.48DELLA protein SLN1 OS=Hordeum vulgare GN=SLN1 PE=1... [more]
SCL8_ARATH2.883e-1137.80Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246J15 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246J15 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403894 ID=DR403894; Name=DR403894; organism=Citrus sinensis; type=EST; length=537bp
CGGGACATAGTCAACATGCTATTTTGTGAGGGGATTGAAAGGGTGGAACG
GCATGANNTTCTTGGTAAGTGGAGATCACGTTTTATGATGGCAGGATTTA
CCCCATATCGATTGAGTCCTTTGGTGACAAATGCTGTGAGGGATGTATTG
AAAGACTATGATAGTAACTATAGAGTTGAAGAGAATGATGGGGCTCTTTA
TCTCGGCTGGAGAAACAGAGCTATGGCCACCTCTTCTGCATGGAAGTGAA
AAACCATTATAGAAACTCTGTATAATTAACCCCCACAGTTTTTGTTGTAG
CTTTTAGAGCACGAGTCATAGTGATATTTGTTAGTTGTAACTTAATAGAA
CGGAGAGTAGCTGTCAATTATCATCTAATAGAACCTCAACTTTACTGTAA
ATGTCCACGTTGTAATATGATAAGCAGACAGGTCTGAATTTTACTGAACT
TACGGTGTTATAACGTTTGTGTTTCTTGGTTACTAAATGAAGGAAAAAAA
TTTCTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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