DR403892

Overview
NameDR403892
Unique NameDR403892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.872e-34
Identity = 74/143 (51.75%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG +K   +K ++ K ++ G   +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFK-GTVKAENGKLVING-NAITIFQERDPSNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDKSL 142          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.872e-34
Identity = 75/142 (52.82%), Postives = 90/142 (63.38%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 503
            M  +K+GINGFGRIGR+V R  ++  DVE+VAVNDPFI+T Y  YM KYDS HG +       +D   L+   K V  +  R+P  IPW ETGA+YVVESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAVEHPDVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGE--IAQDGNDLVINGKKVKFYTERDPAVIPWKETGADYVVESTGVFTTIDKAKAHLQGGAKKVIISAPSADAPMYVMGVNEKSY 140          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.363e-34
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 503
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI  DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W   GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MSKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGSAGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   87 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 73/144 (50.69%), Postives = 96/144 (66.67%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 509
            M  + +GINGFGRIGRLV R  LQ+  +++VA+NDPFI   YM YMFKYDS HG++K  E+ ++D K L+  +  ++VF    P EIPW + GA+YVVESTGVF                V++SAPS DAPMFV+GVNE ++ P
Sbjct:    1 MSDLCVGINGFGRIGRLVLRACLQKG-IKVVAINDPFIDLQYMVYMFKYDSTHGRYK-GEVSMEDGK-LIVDDHSISVFQCMKPHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSPDAPMFVMGVNEDKFDP 141          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   90 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            K+GINGFGRIGR+V R  ++ + V++VAVNDPFI+  Y  YM KYDS HG++  +     D  TL+   K +  +  R+P +IPW+ETGAEYVVESTGVFT               VIISAPS D+PMFV+GVN  +Y  ++
Sbjct:    5 KVGINGFGRIGRIVFRNAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRF--NGTVEFDGNTLIVNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSSDSPMFVMGVNNDQYTKDI 144          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 503
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI  DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MTKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 74/142 (52.11%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   90 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            ++GINGFGRIGR+V R  L   +V++VA+NDPFI  +YM YMFKYDSVHG+++   ++ KD K ++ G K ++VF  R+P +IPW    A YVVESTGVFT               VIISAPS DAPMFV GVN  +Y  +L
Sbjct:    4 QVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHGRFQ-GTVEAKDGKLVVNG-KEISVFSERDPAQIPWGSVEAAYVVESTGVFTSIDAASAHLQGGAKKVIISAPSGDAPMFVCGVNLEKYTSDL 143          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 77/149 (51.68%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   78 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 503
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI  DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of DR403892 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 142.124 bits (357), Expect = 1.417e-33
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:   87 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFIKTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 515
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ +  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-NGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTL 142          
The following BLAST results are available for this feature:
BLAST of DR403892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 313
Match NameE-valueIdentityDescription
G3P_COTJA4.872e-3451.75Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_COLLN4.872e-3452.82Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P3_CAEBR6.363e-3451.68Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_PIG1.085e-3351.05Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3P_ONCMY1.085e-3350.69Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
G3P_MONAN1.085e-3350.00Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P3_CAEEL1.085e-3351.68Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_RHIRA1.085e-3352.11Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P2_CAEEL1.085e-3351.68Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_BOVIN1.417e-3351.05Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246J13 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246J13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403892 ID=DR403892; Name=DR403892; organism=Citrus sinensis; type=EST; length=515bp
GGGACCACGACTGCTCTCTCTTTCTCTACAACTTTCTTCACCACTCTTTC
ACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAAT
CAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGA
GGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCAAAACCGAT
TACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCA
CCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGC
CTGTCACCGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
ACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGA
TAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAG
CCCCCAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAG
TACAAACCAGAGCTC
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