CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC1 (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 10987) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC0 (50S ribosomal protein L2 OS=Bacillus cereus (strain AH820) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACAN (50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACAH (50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACAC (50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACAA (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.141e-38
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_DESPS (50S ribosomal protein L2 OS=Desulfotalea psychrophila GN=rplB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.194e-37
Identity = 87/161 (54.04%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+  +V DKI+   A  +++ Q G+C+PLA + +GTIIHNIE+  G+G ++VR+AGTSA+++ +    + LVRLPSG  +     CRA +G V N  + ++KL KAG+SRWLG+RP VRGVAMNPVDHP GGGEG  KSSG  GR   TPWG P K GYKT
Sbjct:  107 PEGVSVGDKIV---AGDNVDIQPGNCLPLANIPLGTIIHNIEMKIGKGAQIVRSAGTSAQLMAKE-GDYVLVRLPSGEVRKFHRLCRACVGQVGNREYESQKLGKAGRSRWLGKRPHVRGVAMNPVDHPMGGGEG--KSSG--GRHPCTPWGMPTK-GYKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.559e-37
Identity = 84/171 (49.12%), Postives = 113/171 (66.08%), Query Frame = -3
Query:  169 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 681
            G+ S    P++ +V D+++      D+    G+ MPLA M +GTI+HNIE+  G+GG +VR+AGT A+++      + ++RL SG ++LI  +C AT+G VSNP H    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:   99 GEQSYIIAPQRLSVGDEVVSSQ-QADVKP--GNAMPLASMPVGTIVHNIEMKIGKGGAMVRSAGTFAQVVGRD-QGYVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.036e-37
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = -3
Query:  175 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 606
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP   GYKT
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKPA-LGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.036e-37
Identity = 81/144 (56.25%), Postives = 106/144 (73.61%), Query Frame = -3
Query:  175 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 606
            +++ ++G+ +PL  + +GTIIHNIE+ PG+GG+LVRAAGT+A+++ +    +  VR+PSG  +LI   CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP   GYKT
Sbjct:  121 NVDIKVGNALPLRNIPVGTIIHNIELIPGKGGQLVRAAGTAAQLMAKE-GDYVQVRMPSGEIRLIKADCRATIGQVSNLDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKPA-LGYKT 259          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC19.141e-3853.2950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC09.141e-3853.2950S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACAN9.141e-3853.2950S ribosomal protein L2 OS=Bacillus anthracis GN=... [more]
RL2_BACAH9.141e-3853.2950S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACAC9.141e-3853.2950S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_BACAA9.141e-3853.2950S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_DESPS1.194e-3754.0450S ribosomal protein L2 OS=Desulfotalea psychroph... [more]
RL2_METSB1.559e-3749.1250S ribosomal protein L2 OS=Methylocella silvestri... [more]
RL2_THEPX2.036e-3756.2550S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP32.036e-3756.2550S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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