CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_MESSB (50S ribosomal protein L2 OS=Mesorhizobium sp. (strain BNC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.036e-37
Identity = 77/163 (47.24%), Postives = 107/163 (65.64%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++    D+++     VD+    G+ MPLA M +GTI+HN+E+ PG+GG++ R+AG+ A+++        ++RL SG ++L+   C AT+G VSNP H    L KAG+ RWLG+RP  RGV MNPVDHPHGGGEGR+      GR  ++PWGKP K G KT S
Sbjct:  107 PQRLAAGDRVISSAQSVDVKP--GNAMPLAAMPVGTIVHNVELKPGKGGQIARSAGSYAQLVGRD-QGMAILRLNSGEQRLVSGTCMATVGAVSNPDHANVSLGKAGRKRWLGKRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GRKTRS 261          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.660e-37
Identity = 84/161 (52.17%), Postives = 108/161 (67.08%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT A+I+      + +VRL SG ++L+  RCR TIG VSNP H    + KAG+ RW+GRRP  RGVAMNP+DHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQIVGRD-QDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACCQ (50S ribosomal protein L2 OS=Bacillus cereus (strain Q1) GN=rplB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.474e-37
Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA +G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRAAVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACCN (50S ribosomal protein L2 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rplB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.474e-37
Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+   CRAT+G V N SH   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGR+      GR S ++PWGKP   G+KT
Sbjct:  114 MEVMSGPEADIKIGNALPLMNIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLATCRATVGQVGNESHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRAPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_NEOSM (50S ribosomal protein L2 OS=Neorickettsia sennetsu (strain Miyayama) GN=rplB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.537e-37
Identity = 81/141 (57.45%), Postives = 102/141 (72.34%), Query Frame = -3
Query:  166 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTASP 588
            G+CMPL  + +GT +HN+E+ PG GG+LVR+AG+SA+++     ++ LV LPSG ++LI + C ATIG VSN      KL KAG+SRWLGRRP VRGVAMNPVDHP GGGEG  K+SG  GR  ++PWG P K G KT  P
Sbjct:  132 GACMPLGKVPLGTTVHNVELKPGAGGQLVRSAGSSARVIARD-GNYTLVTLPSGEKRLILSTCHATIGAVSNADRKNTKLGKAGRSRWLGRRPSVRGVAMNPVDHPMGGGEG--KTSG--GRHPVSPWGFPTK-GKKTRDP 266          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.537e-37
Identity = 83/148 (56.08%), Postives = 104/148 (70.27%), Query Frame = -3
Query:  175 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 618
            M+  +++ +IG+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMNPVDHPHGGGEG++          LTPWGKP   GYKT
Sbjct:  117 MSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNPVDHPHGGGEGKAPIG---HPSPLTPWGKP-TLGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.537e-37
Identity = 82/163 (50.31%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++    +VD+    G+ MPL  M +GTIIHNIEV  G+GG+L R+AGT A+++      + ++RL SG ++L+  RCR TIG VSNP H    + KAG++RWLGR+P  RGV+MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDSVVAGN-YVDVKP--GNVMPLGNMPVGTIIHNIEVKIGKGGQLARSAGTYAQLVGRD-QDYVIIRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRNRWLGRKPHNRGVSMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 78/144 (54.17%), Postives = 106/144 (73.61%), Query Frame = -3
Query:  175 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 606
            +++ ++G+ +PL  + +GTI+HNIE+ PG+GG+LVRAAG +A+++ +    +  +R+PSG  +LI+  CRATIG VSN  H   K+ KAG+SRWLG RP VRG AMNPVDHPHGGGEG++   G+ G   LTPWGKP   GYKT
Sbjct:  121 NVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMAKE-GDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAGRSRWLGIRPTVRGSAMNPVDHPHGGGEGKA-PIGHPG--PLTPWGKPA-LGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 83/163 (50.92%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+SRWLGR+P  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVLAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_MAGSM (50S ribosomal protein L2 OS=Magnetococcus sp. (strain MC-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37
Identity = 77/171 (45.03%), Postives = 112/171 (65.50%), Query Frame = -3
Query:  169 GDPSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 681
            G+ S    P++  V D ++      +++ + G+CMPL  M IGTIIHN+E+ PG+GG++ R+AG   +++ +    +  +++PSG  +L+   C AT+G VSNP +   K+ KAG++RW+G+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWG P K G KT S
Sbjct:   99 GEKSYILAPQRLQVGDTVVSAKTLDNVDVKPGNCMPLRVMPIGTIIHNVELKPGKGGQVARSAGNYIQLMGKE-GKYAQLKMPSGEMRLVLLECMATVGMVSNPDNSNTKIGKAGRTRWMGKRPSVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GKKTRS 263          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MESSB2.036e-3747.2450S ribosomal protein L2 OS=Mesorhizobium sp. (str... [more]
RL2_BRASB2.660e-3752.1750S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_BACCQ3.474e-3752.6350S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACCN3.474e-3752.6350S ribosomal protein L2 OS=Bacillus cereus subsp.... [more]
RL2_NEOSM4.537e-3757.4550S ribosomal protein L2 OS=Neorickettsia sennetsu... [more]
RL2_DICT64.537e-3756.0850S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RL2_BRAJA4.537e-3750.3150S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_THETN5.925e-3754.1750S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_RHOPB5.925e-3750.9250S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_MAGSM5.925e-3745.0350S ribosomal protein L2 OS=Magnetococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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