CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 5.925e-37 Identity = 83/161 (51.55%), Postives = 108/161 (67.08%), Query Frame = -3 Query: 175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657 P++ V D I+ +VD+ G+ MPL M +GTI+HNIEV G+GG+L R+AGT A+++ + +VRL SG ++L+ RCR TIG VSNP H + KAG+ RW+GRRP RGVAMNP+DHPHGGGEGR+ GR +TPWGKP K G KT Sbjct: 107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRRPHNRGVAMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.739e-37 Identity = 80/163 (49.08%), Postives = 110/163 (67.48%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V DK++ A ++ + G+ MPLA M +GTI+HN+E+ PG+GG++ R+AGT A+++ ++RL SG ++L+ C A++G VSNP HG KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+ GR +TPWGKP K G KT S Sbjct: 107 PQRLAVGDKVV---AGNSVDVKPGNAMPLASMPVGTIVHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVPGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.739e-37 Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRA+IG V N H K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC4 (50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.739e-37 Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRA+IG V N H K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 7.739e-37 Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRA+IG V N H K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GLUOX (50S ribosomal protein L2 OS=Gluconobacter oxydans GN=rplB PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.011e-36 Identity = 81/161 (50.31%), Postives = 108/161 (67.08%), Query Frame = -3 Query: 175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657 P++ V D+++ AH D+ G+ MPL M +GTI+HNIE+ G GGKL R+AGT A+++ + + + V+L SG +L+ C AT+G VSNP + + + KAG+SRWLGRRP RGV MNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 107 PQRVKVGDRVISG-AHTDVKP--GNAMPLGAMPVGTIVHNIELKQGAGGKLARSAGTYAQLVGKD-AGYAQVKLQSGELRLVRGECMATVGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKT 258
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACWK (50S ribosomal protein L2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplB PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 1.011e-36 Identity = 80/152 (52.63%), Postives = 108/152 (71.05%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627 M M+ + + +IG+ +PL + +GT++HNIE+ PG+GG+LVR+AGTSA++L + + LVRL SG +L+ + CRA+IG V N H K+ KAG+SRWLG+RP VRG MNPVDHPHGGGEGRS GR S ++PWGKP G+KT Sbjct: 114 MEVMSGPESDIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SINMW (50S ribosomal protein L2 OS=Sinorhizobium medicae (strain WSM419) GN=rplB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.320e-36 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V DK++ VD+ G+ MPL + +G+IIHN+E+ PG+GG++ R+AGT A+++ ++RL SG ++L+ C A+IG VSNP HG KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ GR +TPWGKP K G +T S Sbjct: 107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHIME (50S ribosomal protein L2 OS=Rhizobium meliloti GN=rplB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.320e-36 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = -3 Query: 169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657 P++ V DK++ VD+ G+ MPL + +G+IIHN+E+ PG+GG++ R+AGT A+++ ++RL SG ++L+ C A+IG VSNP HG KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+ GR +TPWGKP K G +T S Sbjct: 107 PQRLAVGDKVIASEKAVDVKP--GNAMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_PERMH (50S ribosomal protein L2 OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=rplB PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.320e-36 Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = -3 Query: 175 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 618 +A D ++G+ +PL + +GT IHNIE+ PG+GG+LVRAAG SA+IL + VRLPSG +LI +C AT+GTV H KL KAG++RWLG RP VRG AMNPVDHPHGGGEG++ G+ ++PWG+P K GYKT Sbjct: 117 VAGPDAEIKVGNALPLENIPVGTFIHNIELTPGKGGQLVRAAGMSAQILGRQ-GDYVQVRLPSGEIRLIHKKCMATVGTVGLAEHELIKLGKAGRARWLGIRPTVRGTAMNPVDHPHGGGEGKT-----FGKHPVSPWGQPTK-GYKT 257 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |