CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++  ++G+ +PL  M +GT IHNIE+  G+GGKL RAAG  AK++ +   S  L +LPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +  +TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = -3
Query:  196 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 591
            IG+ +PL  + +GT IHNIE+ PG GG+L RAAG+ A+++ +   +F  +RLPSG  +L+   C ATIG V N       + KAG+SRWLGRRP VRGV MNPVDHPHGGGEGR+    +     +TPWG+P
Sbjct:  126 IGNSLPLHQIPLGTEIHNIELKPGSGGQLARAAGSVAQLVAKE-GNFVTLRLPSGEIRLVSKSCWATIGQVGNVEQMNLTVGKAGKSRWLGRRPKVRGVVMNPVDHPHGGGEGRAPIGRSR---PVTPWGRP 253          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 72/154 (46.75%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++   +G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L RLPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+          +TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKR---PMTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++  ++G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L +LPSG  +LI   C AT+G V N     KKL +AG   WLG+RPVVRGV MNPVDHPHGGGEGR+       +   TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVEVNQKKLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPATPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = -3
Query:  196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657
            P+   + D I+   +  ++   +G+ +PL  M +GT IHNIE+  G+GG+L RAAG  AK++ +   S  L RLPSG  +LI   C AT+G V N     K L +AG   WLG+RPVVRGV MNPVDHPHGGGEGRS       +   TPWG P
Sbjct:  105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRSPIG---RKKPTTPWGYP 251          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STAES (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = -3
Query:  196 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 615
            A  DI  ++G+ +PL  + +GT+IHNIE+ PG+GG+L R+AG S+++L +    + L+RL SG  ++I + CRATIG V N  H    + KAG+SRW G RP VRG  MNP DHPHGGGEGR+      GR S ++PWGKP
Sbjct:  120 AEADI--KVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGKE-GKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGVRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STAEQ (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = -3
Query:  196 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 615
            A  DI  ++G+ +PL  + +GT+IHNIE+ PG+GG+L R+AG S+++L +    + L+RL SG  ++I + CRATIG V N  H    + KAG+SRW G RP VRG  MNP DHPHGGGEGR+      GR S ++PWGKP
Sbjct:  120 AEADI--KVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGKE-GKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGVRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESW (50S ribosomal protein L2 OS=Shewanella sp. (strain W3-18-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3
Query:  169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609
            V+   + G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESR (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-7) GN=rplB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3
Query:  169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609
            V+   + G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESM (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-4) GN=rplB PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3
Query:  169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609
            V+   + G+ MPL  + +G+++H +E+ PG+G ++ R+AG   +++     ++  +RL SG  + +   CRAT G V N  H  ++L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT S
Sbjct:  120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_LOTJA1.670e-3146.7550S ribosomal protein L2, chloroplastic OS=Lotus j... [more]
RK2_LEPTE1.670e-3152.2750S ribosomal protein L2, chloroplastic OS=Leptosi... [more]
RK2_LEMMI1.670e-3146.7550S ribosomal protein L2, chloroplastic OS=Lemna m... [more]
RK2_EUCGG1.670e-3146.7550S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]
RK2B_CHLSC1.670e-3147.4050S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RL2_STAES2.181e-3150.3550S ribosomal protein L2 OS=Staphylococcus epiderm... [more]
RL2_STAEQ2.181e-3150.3550S ribosomal protein L2 OS=Staphylococcus epiderm... [more]
RL2_SHESW2.181e-3145.5850S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHESR2.181e-3145.5850S ribosomal protein L2 OS=Shewanella sp. (strain... [more]
RL2_SHESM2.181e-3145.5850S ribosomal protein L2 OS=Shewanella sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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