CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31 Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ ++G+ +PL M +GT IHNIE+ G+GGKL RAAG AK++ + S L +LPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ + +TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPVTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31 Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = -3 Query: 196 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 591 IG+ +PL + +GT IHNIE+ PG GG+L RAAG+ A+++ + +F +RLPSG +L+ C ATIG V N + KAG+SRWLGRRP VRGV MNPVDHPHGGGEGR+ + +TPWG+P Sbjct: 126 IGNSLPLHQIPLGTEIHNIELKPGSGGQLARAAGSVAQLVAKE-GNFVTLRLPSGEIRLVSKSCWATIGQVGNVEQMNLTVGKAGKSRWLGRRPKVRGVVMNPVDHPHGGGEGRAPIGRSR---PVTPWGRP 253
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_LEMMI (50S ribosomal protein L2, chloroplastic OS=Lemna minor GN=rpl2 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31 Identity = 72/154 (46.75%), Postives = 94/154 (61.04%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ +G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L RLPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ +TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKR---PMTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31 Identity = 72/154 (46.75%), Postives = 96/154 (62.34%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ ++G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L +LPSG +LI C AT+G V N KKL +AG WLG+RPVVRGV MNPVDHPHGGGEGR+ + TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVGQVGNVEVNQKKLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIG---RKKPATPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.670e-31 Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = -3 Query: 196 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 657 P+ + D I+ + ++ +G+ +PL M +GT IHNIE+ G+GG+L RAAG AK++ + S L RLPSG +LI C AT+G V N K L +AG WLG+RPVVRGV MNPVDHPHGGGEGRS + TPWG P Sbjct: 105 PRGAIIGDTIV---SGTEVPISMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-RLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRSPIG---RKKPTTPWGYP 251
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STAES (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = -3 Query: 196 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 615 A DI ++G+ +PL + +GT+IHNIE+ PG+GG+L R+AG S+++L + + L+RL SG ++I + CRATIG V N H + KAG+SRW G RP VRG MNP DHPHGGGEGR+ GR S ++PWGKP Sbjct: 120 AEADI--KVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGKE-GKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGVRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_STAEQ (50S ribosomal protein L2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 71/141 (50.35%), Postives = 96/141 (68.09%), Query Frame = -3 Query: 196 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKP 615 A DI ++G+ +PL + +GT+IHNIE+ PG+GG+L R+AG S+++L + + L+RL SG ++I + CRATIG V N H + KAG+SRW G RP VRG MNP DHPHGGGEGR+ GR S ++PWGKP Sbjct: 120 AEADI--KVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGKE-GKYVLIRLRSGEVRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGVRPTVRGSVMNPNDHPHGGGEGRAPI----GRPSPMSPWGKP 253
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESW (50S ribosomal protein L2 OS=Shewanella sp. (strain W3-18-1) GN=rplB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3 Query: 169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609 V+ + G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESR (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-7) GN=rplB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3 Query: 169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609 V+ + G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SHESM (50S ribosomal protein L2 OS=Shewanella sp. (strain MR-4) GN=rplB PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31 Identity = 67/147 (45.58%), Postives = 93/147 (63.27%), Query Frame = -3 Query: 169 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 609 V+ + G+ MPL + +G+++H +E+ PG+G ++ R+AG +++ ++ +RL SG + + CRAT G V N H ++L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT S Sbjct: 120 VEAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVARD-GAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAGAKRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGVPTK-GYKTRS 260 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |