CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUMB (50S ribosomal protein L2 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUC2 (50S ribosomal protein L2 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUAB (50S ribosomal protein L2 OS=Brucella abortus GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUA2 (50S ribosomal protein L2 OS=Brucella abortus (strain 2308) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUA1 (50S ribosomal protein L2 OS=Brucella abortus (strain S19) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BACST (50S ribosomal protein L2 OS=Bacillus stearothermophilus GN=rplB PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.941e-36
Identity = 79/152 (51.97%), Postives = 106/152 (69.74%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  D + +IG+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + +VRL SG  ++I  +CRAT+G V N  H    + KAG++RWLG RP VRG  MNPVDHPHGGGEG++      GR S +TPWGKP   GYKT
Sbjct:  114 MEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIVRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP-TLGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHORT (50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 76/140 (54.29%), Postives = 100/140 (71.43%), Query Frame = -3
Query:  169 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 588
            G+ MPL  M +GTIIHN+E+ PG+GG+L R+AG  A+++ +  + +  +RL SG  +L+   C AT+G VSNP +  +KL KAG+SRW+GRRP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:  127 GNAMPLKNMPVGTIIHNVEMKPGKGGQLARSAGCYAQLIGKD-AGYAQLRLSSGELRLVRGECLATVGAVSNPDNQNEKLGKAGRSRWMGRRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.841e-36
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = -3
Query:  175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588
            G+ MPLA + +GTI+HN+E+ PG+GG++ R+AGT  +++      + L+RL SG ++++   C A+IG VSNP H    + KAG++RWLG+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  127 GNAMPLANIPVGTIVHNVEMKPGKGGQIARSAGTYVQLVGRD-QGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAGRNRWLGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_DICTD (50S ribosomal protein L2 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36
Identity = 81/148 (54.73%), Postives = 103/148 (69.59%), Query Frame = -3
Query:  175 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 618
            M+  +++ ++G+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+A+IL +    +  VRLPSG  +L D  CRATIG VSN  H    L KAG+SRWLGRRP VRG AMN VDHPHGGGEG++          LTPWGKP   GYKT
Sbjct:  117 MSGENVDIKVGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGKE-GKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLGRRPHVRGSAMNAVDHPHGGGEGKAPIG---HPSPLTPWGKP-TLGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUME (50S ribosomal protein L2 OS=Brucella melitensis GN=rplB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNSVDVKPGNAMPLSSMPVGTIIHNVELMPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BRUMB2.941e-3648.4750S ribosomal protein L2 OS=Brucella melitensis bi... [more]
RL2_BRUC22.941e-3648.4750S ribosomal protein L2 OS=Brucella canis (strain... [more]
RL2_BRUAB2.941e-3648.4750S ribosomal protein L2 OS=Brucella abortus GN=rp... [more]
RL2_BRUA22.941e-3648.4750S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BRUA12.941e-3648.4750S ribosomal protein L2 OS=Brucella abortus (stra... [more]
RL2_BACST2.941e-3651.9750S ribosomal protein L2 OS=Bacillus stearothermop... [more]
RL2_RHORT3.841e-3654.2950S ribosomal protein L2 OS=Rhodospirillum rubrum ... [more]
RL2_PARL13.841e-3652.1750S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_DICTD5.016e-3654.7350S ribosomal protein L2 OS=Dictyoglomus turgidum ... [more]
RL2_BRUME5.016e-3648.4750S ribosomal protein L2 OS=Brucella melitensis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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