CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.016e-36
Identity = 78/163 (47.85%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AG  A+++        ++RL SG ++L+ + C AT+G VSNP HG     KAG+SRW G+RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWGKP K G +T S
Sbjct:  107 PQRLGVGDSVV---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRD-HGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGKPTK-GKRTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 79/161 (49.07%), Postives = 112/161 (69.57%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K +V ++++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K G KT
Sbjct:  107 PQKLSVGNRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++LI  RC ATIG VSNP H    + KAG++RWLG RP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHISN (50S ribosomal protein L2 OS=Rhizobium sp. (strain NGR234) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 78/163 (47.85%), Postives = 107/163 (65.64%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A+IG VSNP HG     KAG+SRW G+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:  107 PQRLAAGDKVIASDKAVDVKP--GNTMPLQFIPVGSIIHNVEMKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVHGSCLASIGAVSNPDHGNINDGKAGRSRWRGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 261          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GLUDA (50S ribosomal protein L2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 78/147 (53.06%), Postives = 102/147 (69.39%), Query Frame = -3
Query:  175 AHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 615
            A VDI    G+ MPL+ + +GTI+HNIE+  G GGK+ R+AGT A+++ +  S +  ++L SG  +++   C ATIG VSNP +  + + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K GYKT
Sbjct:  120 ARVDIKP--GNAMPLSAIPVGTIVHNIELKQGAGGKMARSAGTYAQLVGKD-SGYAQIKLQSGELRVVRGECMATIGAVSNPDNMNQHMGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GYKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_BRUO2 (50S ribosomal protein L2 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.551e-36
Identity = 79/163 (48.47%), Postives = 110/163 (67.48%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D+++   A   ++ + G+ MPL+ M +GTIIHN+E+ PG+GG++ R+AGT A+++        ++RL SG ++L+   C A++G VSNP HG     KAG+S W G+RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDQVV---AGNFVDVKPGNAMPLSSMPVGTIIHNVELKPGKGGQIARSAGTYAQLVGRD-QGMAILRLNSGEQRLVSGACFASVGAVSNPDHGNINDGKAGRSVWRGKRPHVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_SULSY (50S ribosomal protein L2 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = -3
Query:  175 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 618
            MA  D   ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAG SA+IL      +  +RLPSG  +L+  +C ATIG V    H   +L KAG+SRWLG RP VRG AMNP DHPHGGGEGR+      G+  ++PWG P K GYKT
Sbjct:  117 MAGPDAEIKVGNALPLENIPVGTLVHNIELTPGKGGQLVRAAGMSAQILGRE-GDYVQIRLPSGELRLVYKKCMATIGAVGLAEHELLELGKAGRSRWLGIRPTVRGTAMNPADHPHGGGEGRT-----FGKHPVSPWGLPTK-GYKT 257          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RICCK (50S ribosomal protein L2 OS=Rickettsia canadensis (strain McKiel) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 81/161 (50.31%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K +V DK++      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +LI   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K G KT
Sbjct:  107 PQKLSVGDKVISSQ---DADIKIGNCLPLKFIPIGTTVHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLIPLDCKATIGSISNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 83/161 (51.55%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K G KT
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.556e-36
Identity = 83/161 (51.55%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K  V DKI+      D + +IG+C+PL  + IGT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C ATIGTVSNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K G KT
Sbjct:  107 PQKLVVGDKIISSK---DADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK-GKKT 258          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BART15.016e-3647.8550S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_RICM56.551e-3649.0750S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RHOP56.551e-3650.3150S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHISN6.551e-3647.8550S ribosomal protein L2 OS=Rhizobium sp. (strain ... [more]
RL2_GLUDA6.551e-3653.0650S ribosomal protein L2 OS=Gluconacetobacter diaz... [more]
RL2_BRUO26.551e-3648.4750S ribosomal protein L2 OS=Brucella ovis (strain ... [more]
RL2_SULSY8.556e-3652.0350S ribosomal protein L2 OS=Sulfurihydrogenibium s... [more]
RL2_RICCK8.556e-3650.3150S ribosomal protein L2 OS=Rickettsia canadensis ... [more]
RL2_RICBR8.556e-3651.5550S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB88.556e-3651.5550S ribosomal protein L2 OS=Rickettsia bellii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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