CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ACICJ (50S ribosomal protein L2 OS=Acidiphilium cryptum (strain JF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.117e-35
Identity = 81/161 (50.31%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P++  V D+++   A V ++ + G+ MPL+ + +GTI+HNIE+  G GGKL R+AGT A+++ +    +  V+L SG  +LI   C A+IG VSNP H  ++L KAG+ RWLGRRP  RGVAMNPVDHP GGGEGR+      GR  +TPWGKP K G KT
Sbjct:  107 PQRLKVGDQVV---AGVKVDVKPGNAMPLSAIPVGTIVHNIELKAGAGGKLARSAGTFAQLVGKD-QGYAQVKLMSGELRLIRGECMASIGAVSNPDHSNQQLGKAGRKRWLGRRPHNRGVAMNPVDHPLGGGEGRTSG----GRNPVTPWGKPTK-GAKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.459e-35
Identity = 79/161 (49.07%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+K +V D++M      D + +IG+C+PL  + +GT +HN+E+  G+GG++ R+AGTS  ++ +  S +  ++L SG  +L+   C+ATIG++SNP      L KAG++RWLG RP VRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWG P K G KT
Sbjct:  107 PQKLSVGDRVMSSQ---DADIKIGNCLPLKFIPVGTTLHNVEMKVGKGGQIARSAGTSVDLVGKD-SGYAQIKLRSGEFRLVPLDCKATIGSISNPDRKNINLGKAGRNRWLGWRPHVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGFPTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.459e-35
Identity = 84/161 (52.17%), Postives = 108/161 (67.08%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+   V DKI+      +IN  +G+C+PL  + +GTIIHNIE+ PG+GG++ R+AGT A +L +  S +  ++  SG  + I    RAT+G+VSN  H      KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWGK  K G KT
Sbjct:  107 PRNLNVGDKIISS-DKAEIN--VGNCLPLEVIPVGTIIHNIEIKPGKGGQVARSAGTYAVLLNKD-SGYAQIKFRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGKKTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_HYDS0 (50S ribosomal protein L2 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.459e-35
Identity = 78/138 (56.52%), Postives = 96/138 (69.57%), Query Frame = -3
Query:  175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588
            G+ MPL  + +GT IHNIE+NPG+G KLVRAAG SA+++ +    +  VRLPSG  +LI+ +C ATIG V    H   KL KAG+SRWLG RP VRG AMNPVDHPHGGGEG++K     G+   +PWG   K GYKT
Sbjct:  137 GNAMPLRFIPVGTFIHNIELNPGRGAKLVRAAGLSAQVIGK-IEGYAQVRLPSGEVRLINDKCMATIGVVGLAEHELVKLGKAGRSRWLGMRPNVRGTAMNPVDHPHGGGEGKTK-----GKHPESPWGWKTK-GYKT 267          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_RHOP2 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.906e-35
Identity = 80/163 (49.08%), Postives = 109/163 (66.87%), Query Frame = -3
Query:  169 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 657
            P++  V D ++   A+VD+    G+ MPL  M IGTI+HN+E+  G+GG++ R+AGT A+++      + ++RL SG ++L+  RC ATIG VSNP H    + KAG++RWLG RP  RGV MNP+DHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  107 PQRLAVGDTVIAG-AYVDVKP--GNVMPLGNMPIGTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIMRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWRPHNRGVVMNPIDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.906e-35
Identity = 76/152 (50.00%), Postives = 106/152 (69.74%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 627
            M  M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTSA++L +    + ++RL SG  ++I  +CRAT+G V N  H    + KAG++RWLG RP VRG  MNPVDHPHGGGEG++      GR S +TPWGKP   GYKT
Sbjct:  114 MEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE-GKYVIIRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLGIRPTVRGSVMNPVDHPHGGGEGKAPI----GRKSPMTPWGKP-TLGYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ACIF5 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.906e-35
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = -3
Query:  175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588
            G+CMPL  + +G+++HN+E+ PG+GG++ R+AG S +++      +  +RL SG  + I   CRATIG V N  HG+++L KAG +RW G RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWG+P K GY+T
Sbjct:  127 GNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMARE-GDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGQPTK-GYRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ACIF2 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.906e-35
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = -3
Query:  175 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 588
            G+CMPL  + +G+++HN+E+ PG+GG++ R+AG S +++      +  +RL SG  + I   CRATIG V N  HG+++L KAG +RW G RP VRGVAMNPVDHPHGGGEGR+      GR  ++PWG+P K GY+T
Sbjct:  127 GNCMPLRGIPVGSVVHNVEMRPGKGGQIARSAGASVQLMARE-GDYAQLRLRSGEVRRIHVSCRATIGEVGNEEHGSRQLGKAGATRWRGVRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVSPWGQPTK-GYRT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATW (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATT (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_ACICJ1.117e-3550.3150S ribosomal protein L2 OS=Acidiphilium cryptum (... [more]
RL2_RICAH1.459e-3549.0750S ribosomal protein L2 OS=Rickettsia akari (stra... [more]
RL2_ORITI1.459e-3552.1750S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_HYDS01.459e-3556.5250S ribosomal protein L2 OS=Hydrogenobaculum sp. (... [more]
RL2_RHOP21.906e-3549.0850S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_GEOTN1.906e-3550.0050S ribosomal protein L2 OS=Geobacillus thermodeni... [more]
RL2_ACIF51.906e-3550.7250S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_ACIF21.906e-3550.7250S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]
RL2_FRATW2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATT2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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