CX069469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATO (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATH (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATF (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRAP2 (50S ribosomal protein L2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplB PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35 Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3 Query: 175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633 K M ++ ++ +G+CMPL + +GT+IHNIE+ P +G +++R+AGT A+++ + +++ ++RL SG + + CRA IG VSN H K L KAG RW G RP VRGVAMNPVDHPHGGGEGR+ GR +TPWG P K GYKT Sbjct: 113 KDMSVVSGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.251e-35 Identity = 84/161 (52.17%), Postives = 108/161 (67.08%), Query Frame = -3 Query: 175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657 P+ V DKI+ +IN +G+C+ L + +GTIIHNIE+ PG+GG++ R+AGT A +L + S + ++L SG + I RAT+G+VSN H KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG K+SG GR +TPWGK K G KT Sbjct: 107 PRNLNVGDKIISS-DKAEIN--VGNCLSLEVIPVGTIIHNIEIKPGKGGQIARSAGTYAVLLNKD-SGYAQIKLRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGKKTK-GKKT 258
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 4.246e-35 Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = -3 Query: 175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 627 M M+ + + ++G+ +PL + +GT IHNIE+ PG+GG+LVRAAG SA+I + + +VRL SG +L CRATIG+V N H + KAG+SRWLG+RP VRG MNPVDHPHGGGEGR+ G G LTPWGKP G KT Sbjct: 114 MEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI-QGRDGKYVIVRLQSGESRLFLGTCRATIGSVGNEEHELVNIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRA-PIGRSG--PLTPWGKPA-LGLKT 259
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35 Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = -3 Query: 196 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 606 D + + G+C+PL + +GT+IHNIE+ P GGKLVR+AG SA+++ + + +R+PSG +L+ CRATIG V N H + KAG+ RWLG RP VRGV MNPVDHPHGGGEGRS GR +TPWGKP Sbjct: 121 DADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMAKE-GKYANIRMPSGEMRLLLQECRATIGQVGNVEHENITIGKAGRKRWLGIRPTVRGVVMNPVDHPHGGGEGRSPI----GRNPVTPWGKP 252 The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bpback to top |