CX069469

Overview
NameCX069469
Unique NameCX069469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATO (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATN (50S ribosomal protein L2 OS=Francisella tularensis subsp. novicida (strain U112) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATM (50S ribosomal protein L2 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATH (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRATF (50S ribosomal protein L2 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDIAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRAT1 (50S ribosomal protein L2 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVISGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_FRAP2 (50S ribosomal protein L2 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.489e-35
Identity = 75/153 (49.02%), Postives = 103/153 (67.32%), Query Frame = -3
Query:  175 KIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 633
            K M  ++   ++  +G+CMPL  + +GT+IHNIE+ P +G +++R+AGT A+++ +  +++ ++RL SG  + +   CRA IG VSN  H  K L KAG  RW G RP VRGVAMNPVDHPHGGGEGR+      GR  +TPWG P K GYKT
Sbjct:  113 KDMSVVSGEKVDVAVGNCMPLRNIPLGTVIHNIEMKPKKGAQMIRSAGTFAQLVGKD-NAYAIIRLRSGEMRRVLLDCRAVIGVVSNSEHNLKSLGKAGAKRWRGIRPTVRGVAMNPVDHPHGGGEGRTSG----GRHPVTPWGIPTK-GYKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.251e-35
Identity = 84/161 (52.17%), Postives = 108/161 (67.08%), Query Frame = -3
Query:  175 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 657
            P+   V DKI+      +IN  +G+C+ L  + +GTIIHNIE+ PG+GG++ R+AGT A +L +  S +  ++L SG  + I    RAT+G+VSN  H      KAG+ RWLGRRPVVRGVAMNPVDHPHGGGEG  K+SG  GR  +TPWGK  K G KT
Sbjct:  107 PRNLNVGDKIISS-DKAEIN--VGNCLSLEVIPVGTIIHNIEIKPGKGGQIARSAGTYAVLLNKD-SGYAQIKLRSGEVRRISLASRATVGSVSNIDHKNISYGKAGRVRWLGRRPVVRGVAMNPVDHPHGGGEG--KTSG--GRHPVTPWGKKTK-GKKT 258          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_EXISA (50S ribosomal protein L2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplB PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.246e-35
Identity = 79/151 (52.32%), Postives = 101/151 (66.89%), Query Frame = -3
Query:  175 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 627
            M  M+  + + ++G+ +PL  + +GT IHNIE+ PG+GG+LVRAAG SA+I +     + +VRL SG  +L    CRATIG+V N  H    + KAG+SRWLG+RP VRG  MNPVDHPHGGGEGR+   G  G   LTPWGKP   G KT
Sbjct:  114 MEIMSGPEADIKVGNALPLVNIPVGTTIHNIELKPGKGGQLVRAAGASAQI-QGRDGKYVIVRLQSGESRLFLGTCRATIGSVGNEEHELVNIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRA-PIGRSG--PLTPWGKPA-LGLKT 259          
BLAST of CX069469 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.546e-35
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = -3
Query:  196 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKP 606
            D + + G+C+PL  + +GT+IHNIE+ P  GGKLVR+AG SA+++ +    +  +R+PSG  +L+   CRATIG V N  H    + KAG+ RWLG RP VRGV MNPVDHPHGGGEGRS      GR  +TPWGKP
Sbjct:  121 DADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMAKE-GKYANIRMPSGEMRLLLQECRATIGQVGNVEHENITIGKAGRKRWLGIRPTVRGVVMNPVDHPHGGGEGRSPI----GRNPVTPWGKP 252          
The following BLAST results are available for this feature:
BLAST of CX069469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_FRATO2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATN2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATM2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATH2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRATF2.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAT12.489e-3549.0250S ribosomal protein L2 OS=Francisella tularensis... [more]
RL2_FRAP22.489e-3549.0250S ribosomal protein L2 OS=Francisella philomirag... [more]
RL2_ORITB3.251e-3552.1750S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_EXISA4.246e-3552.3250S ribosomal protein L2 OS=Exiguobacterium sp. (s... [more]
RL2_PELTS5.546e-3553.2850S ribosomal protein L2 OS=Pelotomaculum thermopr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069469 ID=CX069469; Name=CX069469; organism=Citrus sinensis; type=EST; length=887bp
CTTTTTTTTTAAGTTCAATCGGAAGTTAAACTTCAGTTTCATTATTGATC
GGTTAAAACTGGATAAAAACTAACTGCAAAGAAAACAAAATAATGTAACA
ATACTAAAAATGCTCACTAGCACAAAAGGACAATATTATCAGAAGGCTAA
TTTCTTTTTCTTCTTAGGAGATGCAGTTTTATACCCAGACTTGCAAGGCT
TGCCCCAAGGTGTAAGTGAACACCGTCCATGGTTACCACTACTTTTGCTT
CGTCCCTCACCTCCACCATGAGGATGATCAACTGGATTCATGGCTACTCC
TCTAACCACAGGTCTTCGACCCAACCAACGGCTCTGACCAGCCTTCCTAA
GCTTCTTAGCTCCATGGCTTGGGTTAGACACTGTACCAATGGTGGCTCGA
CATCTAGTGTCAATCAGTTTCTCATTACCAGAAGGTAGTCTTACTAAACA
GAAGCTTGAAGTGGGTTCTTTCAAAATCTTGGCTGACGTCCCCGCAGCTC
TAACTAGCTTGCCACCTTGTCCTGGGTTTACCTCAATGTTGTGAATGATG
GTCCCAATACGCATACAAGCAAGTGGCATGCAACTTCCAATTTGAGAATT
TATATCAACATGAGCCATCTGTCTCATTATCTTATCACGCACAGTTTCTT
TTTTTGGTTTTTCTTGTTTTGAAGGATCACCAACTAATTCGGTTTCAGAG
GACTGATAGCGATAAGTAGTGTTGTTGTTGAGAACGGAAGGACAGAGAAG
CCTGTTGAAGAGCGTCGATGAAGCTGAGCGTACTCTGCACAAAGCCATTT
CTGCTGATCTCTTTCTGTGTCTCTTTCTCCTACGTTTTGTTTTCTTCTGT
TGATTTCACTGTCTATCACAACATGTTGCCGGCGGTG
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