CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nephroselmis olivacea GN=ndhG PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 46/127 (36.22%), Postives = 69/127 (54.33%), Query Frame = -1 
Query:  343 IYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 723
            +Y+AF LG V  C++  Y+L ++ FVAAAQ+L+YVGA+NVLI+FA+M +N  D +    L+   +   +  + C  +   L+  I  TSW    WT   N +           +G HL +D  L FE
Sbjct:   30 VYAAFLLGAVFFCLAGIYVLLHADFVAAAQVLVYVGAINVLILFAIMLVNPQD-APPRALDSPPL---IPGIACIGLLGVLVQMISTTSWLTPPWTPEPNSL---------PVLGGHLFSDCLLAFE 143
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PAUCH (NAD(P)H-quinone oxidoreductase subunit 6, organellar chromatophore OS=Paulinella chromatophora GN=ndhG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = -1 
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N +YSAF LG V + ++  Y+L N+ FVAAAQ+LIYVGAVNVLI+FA+M +N  +  K   +    I    + +VC  +   L      T W  +        + E+  I    +IG HL +D+ LPFE
Sbjct:   31 NIVYSAFLLGSVFLSVAGLYLLLNASFVAAAQVLIYVGAVNVLILFAIMLVNREEELK--VIPGLAIRRFFSGVVCMGLLVILERIATTTHWAQV----GPIPLGEEATI----RIGEHLFSDYLLPFE 149
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_NEPOL2.618e-1336.22NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PAUCH1.697e-1238.76NAD(P)H-quinone oxidoreductase subunit 6, organell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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