CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_IPOPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ipomoea purpurea GN=ndhG PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.788e-62
Identity = 122/159 (76.73%), Postives = 132/159 (83.02%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   F NPIYSAFSLGLVLVCISLFYILSNS+FVAAAQLLIYVGA+NVLI+FAVMF+NGS+YS DF L  WT+GDG+TS VC S+F SLI+TILDTSWYGIIWTTR+NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLILGSIGVVLFPNPIYSAFSLGLVLVCISLFYILSNSYFVAAAQLLIYVGAINVLILFAVMFLNGSEYSNDFPL--WTLGDGITSQVCISLFISLISTILDTSWYGIIWTTRSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Liriodendron tulipifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.336e-62
Identity = 123/159 (77.36%), Postives = 131/159 (82.39%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLVLVCISLF+I SNS+FVAAAQLLIYVGAVNVLI+FAVMFMNGS+YSKD  L LWT+GDG+TSLVCTSI FSLITTI DTSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLLTNPIYSAFSLGLVLVCISLFHIPSNSYFVAAAQLLIYVGAVNVLIVFAVMFMNGSEYSKD--LYLWTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_RANMC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ranunculus macranthus GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.050e-62
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVLVC SLFY  SNSHFVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y  DF  +LWT+GDG+TSLVCTSIF SLITTI DTSWYGI+WTTR+NQIIEQDLI+NSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGLGFIMGGLGVVLLTNPIFSAFSLGLVLVCTSLFYTPSNSHFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYSDF--HLWTVGDGVTSLVCTSIFVSLITTIPDTSWYGIVWTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_MORIN (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Morus indica GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.984e-62
Identity = 122/159 (76.73%), Postives = 129/159 (81.13%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPIYSAFSLGLVLVCISL YILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y KDF  NLWT+G+G T L+CTSIF  LITTI DTSWYGIIWTTR+NQIIE DLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGLGLILGGIGVVLLTNPIYSAFSLGLVLVCISLLYILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYKDF--NLWTVGNGFTLLICTSIFGLLITTITDTSWYGIIWTTRSNQIIEHDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_POPTR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Populus trichocarpa GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.203e-62
Identity = 119/159 (74.84%), Postives = 131/159 (82.39%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+LPGPIHD                    TNPI+SAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWT+G+GLTSL+CTS+F  LIT I +T+WYGIIWTTRANQIIEQDL+SN QQIGIHLSTDFFLPFE
Sbjct:    1 MNLPGPIHDFLLVFLGLGLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_POPAL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Populus alba GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.203e-62
Identity = 119/159 (74.84%), Postives = 131/159 (82.39%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M+LPGPIHD                    TNPI+SAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y KDF  NLWT+G+GLTSL+CTS+F  LIT I +T+WYGIIWTTRANQIIEQDL+SN QQIGIHLSTDFFLPFE
Sbjct:    1 MNLPGPIHDFLLVFLGLGLILGGLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAINVLILFAVMFMNGSEYYKDF--NLWTVGNGLTSLICTSLFVLLITIISNTTWYGIIWTTRANQIIEQDLVSNGQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_BUXMI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Buxus microphylla GN=ndhG PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.203e-62
Identity = 121/159 (76.10%), Postives = 130/159 (81.76%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                    TNPI+SAFSLGLVL CISLF+I SNSHFVAAAQLLIYVGA+NVLIIFAVMF NGS+Y  DF  ++WT+GDG+TSLVCTSIF SLITTILDTSWYGIIWTTR+NQIIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGIILGGLGVVLLTNPIFSAFSLGLVLFCISLFHIPSNSHFVAAAQLLIYVGAINVLIIFAVMFTNGSEYYNDF--HVWTVGDGVTSLVCTSIFVSLITTILDTSWYGIIWTTRSNQIIEQDLISNGQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SOYBN (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Glycine max GN=ndhG PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.875e-62
Identity = 121/159 (76.10%), Postives = 132/159 (83.02%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP P+HD                   FTNPI+SAFSLGLVLVCISLFYILSNSHFVAA+QLLIYVGA+NVLIIFAVMFMNGS+Y +DF+L  WT+GDG+T +VCTSIF SLITTILDTSW+GIIWTTR NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPEPLHDFLLVFLGSGLILGSLGVVLFTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINVLIIFAVMFMNGSEYYQDFRL--WTVGDGITLMVCTSIFVSLITTILDTSWHGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_AETGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema grandiflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.875e-62
Identity = 120/159 (75.47%), Postives = 130/159 (81.76%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FTNPI+SAFSLG VLVCISL YILSNSHFVAAAQLLIYVGA+ VLIIFAVMFMN S+YS D  LN WT+GDG+TSL+CT+I FSLI+TILDTSWYG+IWTTR NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPGPIHDFLLVFLGSGLLFGSIGVVLFTNPIFSAFSLGFVLVCISLLYILSNSHFVAAAQLLIYVGAITVLIIFAVMFMNDSEYSTD--LNRWTVGDGITSLICTTILFSLISTILDTSWYGVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_DRIGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Drimys granadensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.159e-61
Identity = 123/159 (77.36%), Postives = 131/159 (82.39%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FTNPI+SAFSLGLVLVCISLF+ILSNS+FVAAAQLLIYVGAVNVLIIFAVMFMNGS+Y  DF L  WT+GDG+TSLVCTSI FSLITTI DTSWYGIIWTT +NQIIEQDLISN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPGPIHDILLVFLGSGLILGGLGVVLFTNPIFSAFSLGLVLVCISLFHILSNSYFVAAAQLLIYVGAVNVLIIFAVMFMNGSEYYNDFYL--WTVGDGVTSLVCTSILFSLITTISDTSWYGIIWTTGSNQIIEQDLISNVQQIGIHLSTDFYLPFE 157          
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_IPOPU1.788e-6276.73NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LIRTU2.336e-6277.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_RANMC3.050e-6276.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MORIN3.984e-6276.73NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_POPTR5.203e-6274.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_POPAL5.203e-6274.84NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BUXMI5.203e-6276.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOYBN8.875e-6276.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AETGR8.875e-6275.47NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DRIGR1.159e-6177.36NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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