CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lotus japonicus GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.417e-59
Identity = 116/159 (72.96%), Postives = 127/159 (79.87%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP  +HD                    TNPI+SAFSLGL LVCISL YILSNSHFVAA+QLLIYVGA+NVLIIF VMFMNGS+Y +DF+L  WT+GDG+T +VCTSIF SLITTI DTSWYGIIWTTR+NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLPKTLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLTLVCISLLYILSNSHFVAASQLLIYVGAINVLIIFGVMFMNGSEYYQDFRL--WTVGDGMTLMVCTSIFISLITTIPDTSWYGIIWTTRSNQIIEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CICAR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cicer arietinum GN=ndhG PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.417e-59
Identity = 116/159 (72.96%), Postives = 127/159 (79.87%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M LP  +HD                    TNPI+SAFSLGLVLVCISLFYILSNSHFVAA+QLLIYVGA+N+LIIFAVMFMN S+Y +DF  NLWT+GDG+T +VCTSIF SL+TTI DTSWYGIIWTTR NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MALPETLHDFLLVFLGSGLILGSLGVVLLTNPIFSAFSLGLVLVCISLFYILSNSHFVAASQLLIYVGAINILIIFAVMFMNSSEYYQDF--NLWTVGDGITLIVCTSIFVSLVTTIPDTSWYGIIWTTRPNQIIEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nymphaea alba GN=ndhG PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.123e-59
Identity = 117/159 (73.58%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP PIHD                    TNPIYSAFSLGLVLVCISLFYI SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y   F  + WT+GDG TSLVCTSIFFSLI TI +TSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPAPIHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSLGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYNYF--HFWTVGDGFTSLVCTSIFFSLIATIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cucumis sativus GN=ndhG PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.032e-59
Identity = 118/159 (74.21%), Postives = 130/159 (81.76%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   F N IYSAFSLGLVLV ISLFYIL+N+ FVAAAQLLIYVGA+NVLIIFAVMFM GS+YSKDF  NLWT+G+G+T LVCTSIF SL+TTI+DTSWYGIIWTTR+NQI+EQDLISNSQQIGI+LST FFLPFE
Sbjct:    1 MDLPGPIHDFLVVLLGSGLILGSMGVLLFNNSIYSAFSLGLVLVSISLFYILANAQFVAAAQLLIYVGAINVLIIFAVMFMKGSEYSKDF--NLWTVGNGVTFLVCTSIFVSLMTTIVDTSWYGIIWTTRSNQILEQDLISNSQQIGIYLSTYFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_NUPAD (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nuphar advena GN=ndhG PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.567e-58
Identity = 116/159 (72.96%), Postives = 125/159 (78.62%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLP PIHD                    TNPIYSAFS GLVLVCISLFYI SNS+FVAAAQLLIYVGA+NVLI+FAVMFMNGS+Y   F  + WTIGDG TS+VCTSIFFSLI TI +TSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDF+LPFE
Sbjct:    1 MDLPAPIHDILLVSLGSGLIVGGLGVVLLTNPIYSAFSSGLVLVCISLFYIPSNSYFVAAAQLLIYVGAINVLILFAVMFMNGSEYYNSF--HFWTIGDGFTSVVCTSIFFSLIATIPNTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Amborella trichopoda GN=ndhG PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.046e-58
Identity = 117/159 (73.58%), Postives = 128/159 (80.50%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHD                    TNPIYSAFS GLVLV ISLF+ILSNS+FVAAAQLLIYVGA+NVLIIFAVMFMNGS+Y  +F  +LWT+GDG++S+VCTSI FSLI TILDTSWYGIIWTTR+NQIIEQDL SN QQIGIHLSTDFFLPFE
Sbjct:    1 MDLLGPIHDILLVSLGSGIILGSLGVVLLTNPIYSAFSSGLVLVRISLFHILSNSYFVAAAQLLIYVGAINVLIIFAVMFMNGSEYYNNF--HLWTVGDGISSVVCTSILFSLIATILDTSWYGIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Triticum aestivum GN=ndhG PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.262e-57
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_AGRST (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Agrostis stolonifera GN=ndhG PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.262e-57
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_BRADI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Brachypodium distachyon GN=ndhG PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.954e-57
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFLGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNSWTIGDGFTSLVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_LOLPR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lolium perenne GN=ndhG PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.859e-57
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TS+VC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSIVCITIVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_LOTJA2.417e-5972.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CICAR2.417e-5972.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NYMAL4.123e-5973.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CUCSA7.032e-5974.21NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NUPAD1.567e-5872.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AMBTC2.046e-5873.58NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_WHEAT2.262e-5770.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AGRST2.262e-5770.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BRADI2.954e-5770.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LOLPR3.859e-5769.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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