CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_DIOEL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Dioscorea elephantipes GN=ndhG PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.859e-57
Identity = 115/159 (72.33%), Postives = 127/159 (79.87%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL GPIHD                     N IYSAFSLG VL CISLFYI SNS+FVAAAQLLIYVGA+NVLIIFAVMF++GS+YS D   +LWT+GDG+TS+VCTSIFFSLITTI DTSWYGIIWTTR+NQIIEQDLISN QQIGIHLST+F+LPFE
Sbjct:    1 MDLLGPIHDILVIFLGSVLILGGLGVVLLNNLIYSAFSLGWVLFCISLFYISSNSYFVAAAQLLIYVGAINVLIIFAVMFISGSEYSNDS--HLWTVGDGVTSVVCTSIFFSLITTIPDTSWYGIIWTTRSNQIIEQDLISNVQQIGIHLSTNFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_HORVU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Hordeum vulgare GN=ndhG PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 6.582e-57
Identity = 111/159 (69.81%), Postives = 125/159 (78.62%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +  FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILMLFGGFILLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTSLVCITFVFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Phaseolus vulgaris GN=ndhG PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.596e-57
Identity = 112/159 (70.44%), Postives = 127/159 (79.87%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDL   +HD                   FTN I+SAFSLGLVLVC+SLFYILSNSHFVAA+QLLIYVGA+NVLIIFAVMFMNGS+Y ++F++  WT+GDG+T +VCTSIF S I TILDTSW+GIIWTTR NQI+EQDLIS SQQIGIHLSTDFFLPFE
Sbjct:    1 MDLSESLHDFILVFLGSGLILGSLGVVFFTNTIFSAFSLGLVLVCVSLFYILSNSHFVAASQLLIYVGAINVLIIFAVMFMNGSEYDQNFRV--WTVGDGITLMVCTSIFISQINTILDTSWHGIIWTTRPNQILEQDLISTSQQIGIHLSTDFFLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhG PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.466e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNP +SAFSLGLVLVCISLFYIL NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa subsp. indica GN=ndhG PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.466e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNP +SAFSLGLVLVCISLFYIL NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa GN=ndhG PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.466e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNP +SAFSLGLVLVCISLFYIL NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza nivara GN=ndhG PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.466e-56
Identity = 111/159 (69.81%), Postives = 126/159 (79.25%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNP +SAFSLGLVLVCISLFYIL NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG TSLVC +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPTFSAFSLGLVLVCISLFYILLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNFWTIGDGFTSLVCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SORBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Sorghum bicolor GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.572e-56
Identity = 110/159 (69.18%), Postives = 125/159 (78.62%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SACOF (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Saccharum officinarum GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.572e-56
Identity = 110/159 (69.18%), Postives = 125/159 (78.62%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
[Close]
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SACHY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Saccharum hybrid GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.572e-56
Identity = 110/159 (69.18%), Postives = 125/159 (78.62%), Query Frame = -1 
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFVLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_DIOEL3.859e-5772.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_HORVU6.582e-5769.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PHAVU8.596e-5770.44NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ORYSJ1.466e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ORYSI1.466e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ORYSA1.466e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ORYNI1.466e-5669.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SORBI5.572e-5669.18NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SACOF5.572e-5669.18NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SACHY5.572e-5669.18NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
back to top