CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Zea mays GN=ndhG PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.572e-56
Identity = 110/159 (69.18%), Postives = 125/159 (78.62%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIH+                    TNPIYSAFSLGLVLVCISLFY L NS+FVA AQLLIYVGA+NVLIIFAVMF+NGS++SKD   N WTIGDG T L+C +I FSL+TTI DTSWYGI+WTTR+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:    1 MDLPGPIHEILVLFGGFGLLLGGLGVVLLTNPIYSAFSLGLVLVCISLFYFLLNSYFVAVAQLLIYVGAINVLIIFAVMFVNGSEWSKD--KNYWTIGDGFTLLLCITIPFSLMTTIPDTSWYGILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_FAGEA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=ndhG PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.241e-55
Identity = 111/159 (69.81%), Postives = 128/159 (80.50%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPIHD                   FTNPI+SAFSLGLVLVCISLFYI++NS FVA+AQLLIYVGA+NVLIIFAVMF+NG +Y K+  L L+T+GDG+T ++CT IFF LITTIL+TS YGIIWTT+ NQI+EQDLI+NSQQIGIHLSTDFF PFE
Sbjct:    1 MDLPGPIHDFLLVFFGSGLILGGLGVILFTNPIFSAFSLGLVLVCISLFYIIANSQFVASAQLLIYVGAINVLIIFAVMFINGLEYDKN--LRLFTLGDGMTLVICTGIFFLLITTILNTSGYGIIWTTKLNQILEQDLINNSQQIGIHLSTDFFPPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cycas taitungensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.986e-45
Identity = 98/159 (61.64%), Postives = 112/159 (70.44%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            MDLPGPI D                    TN IYSA SLG VLVCISL YIL N+ FVAAAQ+LIYVGAVNVLI+FAVM MN   Y     + LWT+GDG+T +VCTS+F SLIT IL+TSW  I  TT++NQI+EQDL +N Q+IG HLSTDFFLPFE
Sbjct:    1 MDLPGPIRDILLVPLELGLILGGLEVVLLTNIIYSALSLGPVLVCISLLYILLNADFVAAAQILIYVGAVNVLIVFAVMLMNNQKYPNF--VPLWTVGDGITLVVCTSLFCSLITIILNTSWSEISMTTKSNQILEQDLTNNVQRIGAHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CRYJA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Cryptomeria japonica GN=ndhG PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.548e-40
Identity = 80/130 (61.54%), Postives = 102/130 (78.46%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            TN IYSA SLGLVL+CIS FYI+ N+ FVA AQ+LIY+GAVN+LI+FAVM MN   Y        WT+GD ++S+VCTS+F SLIT IL+ SW+GI  T +++Q++E+DL +N Q+IG HLSTDFFLPFE
Sbjct:   30 TNIIYSALSLGLVLICISFFYIILNADFVAVAQILIYIGAVNILILFAVMLMNNPKYPN--YAPPWTVGDSISSIVCTSLFCSLITIILNISWFGISLTQKSDQMLERDLTNNIQRIGAHLSTDFFLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_MARPO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Marchantia polymorpha GN=ndhG PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.021e-30
Identity = 72/131 (54.96%), Postives = 89/131 (67.94%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNS-QQIGIHLSTDFFLPFE 732
            TN +YSA  LG V VCISL Y+L N+ FVAAAQ+LIYVGAVNVLIIFAVM +N   YS  F    WTIGDG+T  +CTSIF  L   I +TSW  I   T+ N +++  ++ N+ + IG  L T+F LPFE
Sbjct:   30 TNIVYSALFLGFVFVCISLLYLLLNADFVAAAQILIYVGAVNVLIIFAVMLINKKQYSNFFV--YWTIGDGITLTLCTSIFLLLNNFISNTSWSKIFLMTKPNLVVKDIILINTVRHIGSELLTEFLLPFE 158          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Anthoceros formosae GN=ndhG PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.170e-29
Identity = 72/130 (55.38%), Postives = 90/130 (69.23%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            TN +YSAF LGLV VCIS  Y+L ++ FVA AQ+LIYVGAVN+LI+FAVM +N    S  F L  WT+GD +T ++CTS+FF LI+ IL  SW  I    ++N+I EQ L S+ Q IG  L  DF LPFE
Sbjct:   33 TNIVYSAFLLGLVFVCISFLYLLLDADFVATAQILIYVGAVNILIVFAVMLIN-KPQSLQF-LPSWTVGDTITLILCTSLFFLLISMILSISWSNIFSIAQSNKIGEQVLKSSVQGIGSSLLIDFLLPFE 160          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Physcomitrella patens GN=ndhG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 71/161 (44.10%), Postives = 94/161 (58.39%), Query Frame = -1
Query:  343 NIMDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 825
            NI++L GP+ +                    +N +YSAF LGLV  CISL Y   N+ FVAAAQ+LIYVGAVNVLI+FAVM +N  +  K F   +WT+GD +T  +C + FF L+  IL+TSW  I   T +   +E +   N Q+IG  L T + LPFE
Sbjct:    2 NIIELFGPLQEIIFFILEIGVILGSLGVVLLSNIVYSAFFLGLVFFCISLLYFALNADFVAAAQILIYVGAVNVLIVFAVMLINKPESLKIFP--VWTVGDKITLAICLTSFFLLVNIILNTSWSNITVITESKGFLESNFTQNVQRIGSLLLTQYLLPFE 160          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Huperzia lucidula GN=ndhG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.528e-29
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            TN +YSAF LG V VCIS  YIL N+ FVAA Q+LIYVG +NVLI+FAVM +N   Y +   L  WT+GDG    +CTS F S+I  IL T W  I     +N+I+E+ L  N Q+IG H  TD  LPFE
Sbjct:   33 TNIVYSAFLLGWVPVCISFLYILLNADFVAAVQILIYVGTINVLIVFAVMLINKPQYFR--FLKYWTVGDGTALALCTSPFLSIIAAILSTPWSKISLIVLSNKIVEEPLTDNVQRIGFHSLTDSPLPFE 160          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Angiopteris evecta GN=ndhG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.270e-27
Identity = 72/160 (45.00%), Postives = 91/160 (56.88%), Query Frame = -1
Query:  343 MDLPGPIHDXXXXXXXXXXXXXXXXXXXFTNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQL-NLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 819
            M LP PIH                     TN +YSA  LGLV +CISL Y++ N+ FVAAAQ+LIYVGAVNVL +FAVM +   D  K+  L +   +GD +T  VCTS+F  L   I D SW  I  T ++ + +EQ L ++ Q IG  L T F LPFE
Sbjct:    1 MILPEPIHKVILVIIELGILLGSLGVVLLTNIVYSALLLGLVFICISLLYLVLNADFVAAAQVLIYVGAVNVLTVFAVMLI---DKPKNITLFSFSNVGDNITLGVCTSLFILLTIMIPDASWSEIYMTKQSTKFVEQGLTTDVQLIGSQLLTKFLLPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PSINU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Psilotum nudum GN=ndhG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = -1
Query:  343 IYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 723
            + SAFSLGL  + ISL Y++ N+ FVAAAQ+LIYVGA+NVLI+F+VM +     ++D   +  T G+ +T +VCTS+F  L++ ILDTSW  I    ++ +I E  L SN Q IG  L T+F LPFE
Sbjct:   33 VQSAFSLGLTFISISLLYLVLNADFVAAAQVLIYVGAINVLIVFSVMLIQKPHKNEDLSTSRNT-GNNITLIVCTSLFLFLVSIILDTSWSQIYSIKKSTKIFEPILKSNVQLIGSQLLTEFLLPFE 158          
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_MAIZE5.572e-5669.18NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_FAGEA1.241e-5569.81NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CYCTA1.986e-4561.64NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CRYJA9.548e-4061.54NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MARPO4.021e-3054.96NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ANTFO1.170e-2955.38NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PHYPA1.528e-2944.10NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_HUPLU1.528e-2953.08NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ANGEV9.270e-2745.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PSINU1.339e-2549.61NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
back to top