CX069466

Overview
NameCX069466
Unique NameCX069466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Zygnema circumcarinatum GN=ndhG PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = -1
Query:  343 IYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 723
            IYSA  LG V +C++L Y+L N+ F+AAAQ+LIYVGAVNVLI+FA+M ++  D   D +    T G+ +++    ++F  L   I  TSW         ++++ Q L+SN Q IG HL TD   PFE
Sbjct:   34 IYSALLLGFVFICVALLYLLLNADFLAAAQVLIYVGAVNVLIVFAIMLVSTPD---DVKNKPKTTGEIISAFTFIALFVLLTIMIFTTSWDTHHNLATQDEVLLQPLMSNVQTIGFHLLTDLLFPFE 157          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_STAPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Staurastrum punctulatum GN=ndhG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = -1
Query:  343 IYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 723
            IYSA  LG+V VC++L Y+L N+ F+AAAQ+LIYVGA+NVLI+FA+M +N  +          T GD L+      +F  LI  IL+T+W   +  T  +Q ++     +   IGIHL TD  LPFE
Sbjct:   36 IYSALFLGVVFVCVALLYLLLNADFLAAAQILIYVGAINVLIVFAIMLINKPE--TKINKKKITFGDILSGFSVFGLFSFLIIMILNTTW---LQPTLVSQEVKNS-FQSIDIIGIHLLTDLLLPFE 156          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_MESVI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Mesostigma viride GN=ndhG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N +YS F LG VL+CI+  Y+L N+ F+AAAQ+LIYVGA+NV+I+FA+M +N  +       N   + +GL+S +C S F  L   I DT W   +  +    I           IG H+ +DF LPFE
Sbjct:   31 NILYSGFLLGGVLICIAGIYLLLNAEFIAAAQVLIYVGAINVIILFAIMLVNKIENLN--PSNNQMMRNGLSSFICFSFFILLSNMIFDTQWIDTVGVSTKYSI---------SIIGNHIFSDFLLPFE 148          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ADICA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Adiantum capillus-veneris GN=ndhG PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.585e-18
Identity = 56/129 (43.41%), Postives = 74/129 (57.36%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N + SAFSLGLV  CISL Y + N+ FVAAAQLL+YVGA+NVL +FAVM    +D     +     IG  +T+  CT +F  L   I +T W  +    ++       L SN QQ+G  L  +F +PFE
Sbjct:   31 NTVNSAFSLGLVFTCISLLYFVLNADFVAAAQLLVYVGAINVLTVFAVMI---TDEPAGSETTARGIGYIITAGTCTILFSILSFVIHNTKWSDLSLIPQSGISTSGTLGSNVQQLGYKLLGEFVIPFE 156          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_PLEBO (NAD(P)H-quinone oxidoreductase chain 6 OS=Plectonema boryanum GN=ndhG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.866e-18
Identity = 58/129 (44.96%), Postives = 75/129 (58.14%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N +YSAF LG V + I+  Y+L N+ FVAAAQ+LIYVGAVNVLI+FA+M +N  +  +    + W I    T+LVC  IF  L   +L T      W       IE  +I+    IG+H  TDF LPFE
Sbjct:   31 NVVYSAFLLGGVFISIAGLYLLLNADFVAAAQVLIYVGAVNVLILFAIMLVNKREAFQPIAKS-W-IRRAATALVCAGIFALLSAMVLTTP-----WAISTAVPIESSIIT----IGLHFFTDFLLPFE 148          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_SYNY3 (NAD(P)H-quinone oxidoreductase chain 6 OS=Synechocystis sp. (strain PCC 6803) GN=ndhG PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.027e-17
Identity = 59/131 (45.04%), Postives = 78/131 (59.54%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMN-GSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            +N +YSAF LG V + IS  YIL N+ FVAAAQ+L+YVGAV+VLI+FA+M +N   D+SK     L  +    T+LVCT IF  L T +L T W            +E  L++    IG H  +D+ LPFE
Sbjct:   30 SNIVYSAFLLGGVFLSISGIYILLNADFVAAAQVLVYVGAVSVLILFAIMLVNKREDFSKIPGRWLRNVS---TALVCTGIFALLSTMVLITPWQ----INETGPFVENTLVT----IGKHFFSDYLLPFE 149          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Chlorokybus atmophyticus GN=ndhG PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSD-YSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWY--GIIWTT----RANQIIEQDLISNS-QQIGIHLSTDFFLPFE 729
            N +YSAF LG VL+ I+  Y+L N+ FVAAAQ+LIYVGA+NVLI+FA+M +N +D        N   + + +  L C  +   LI  I+ T W   G+   T    +A+    Q  +  S   IG+H+ +DF LPFE
Sbjct:   31 NILYSAFLLGGVLMSIAGIYLLLNADFVAAAQVLIYVGAINVLILFAIMLVNKNDGRVAAGTSNSSGVTNNIIGLTCIGLAGFLIDMIVTTPWLPKGVAVATSLSAKADSTAAQTQLKGSISIIGLHIFSDFLLPFE 167          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CHAVU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Chara vulgaris GN=ndhG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.654e-15
Identity = 50/129 (38.76%), Postives = 80/129 (62.02%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N +Y+A SL LVL  I+L Y+  ++ F+A  Q+LIYVGA+NVLI+FA+M ++    S  F +  +T    +++  C S+F  L+  IL T      W+T+++ I+  +  +   QIGI+L ++F LPFE
Sbjct:   32 NIVYAAISLALVLSLIALLYLFFDADFLAVTQILIYVGAINVLILFAIMLIS-LPKSSTF-IFYFTKKSQISAFACISLFVLLVKIILQTP-----WSTQSSYILLNE-NNKLDQIGIYLLSNFLLPFE 152          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_ANASP (NAD(P)H-quinone oxidoreductase chain 6 OS=Anabaena sp. (strain PCC 7120) GN=ndhG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  343 TNPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMN-GSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSW-YGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 732
            T+ +YSAF LG V + I+  Y+L N  FVAAAQ+L+YVGAVNVLI+FA+M +N   D++      +  +   LT++V   +F  L T +L T W Y          II          IG H  +DF LPFE
Sbjct:   30 TSIVYSAFLLGGVFISIAGMYLLLNGDFVAAAQVLVYVGAVNVLILFAIMLVNKRQDFTPYPSAGIRKV---LTAIVSVGLFALLSTMVLATPWAYSTTPKVGDGSII---------VIGEHFFSDFLLPFE 149          
BLAST of CX069466 vs. ExPASy Swiss-Prot
Match: NU6C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Chaetosphaeridium globosum GN=ndhG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 46/129 (35.66%), Postives = 73/129 (56.59%), Query Frame = -1
Query:  343 NPIYSAFSLGLVLVCISLFYILSNSHFVAAAQLLIYVGAVNVLIIFAVMFMNGSDYSKDFQLNLWTIGDGLTSLVCTSIFFSLITTILDTSWYGIIWTTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 729
            N IYSA  LGL  + ++L Y+L  S F++ AQ++IYVGA+NVLI+FA+M +N  ++ K     +W   D L S     I FS I T++ T+ + ++      ++   + +S   +IG    +   LPFE
Sbjct:   29 NIIYSALFLGLTFLSVALLYLLLGSEFLSVAQVIIYVGAINVLIVFAIMLVNKPEFDKKDM--IWVPID-LKSFCVNFILFSTIVTMIVTTPWKLLVNNIDVKLNSLNFLSPIAKIGYQFLSTLVLPFE 154          
The following BLAST results are available for this feature:
BLAST of CX069466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
NU6C_ZYGCR1.296e-2043.31NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_STAPU4.171e-1944.09NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_MESVI1.585e-1841.09NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ADICA1.585e-1843.41NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PLEBO7.866e-1844.96NAD(P)H-quinone oxidoreductase chain 6 OS=Plectone... [more]
NU6C_SYNY31.027e-1745.04NAD(P)H-quinone oxidoreductase chain 6 OS=Synechoc... [more]
NU6C_CHLAT7.362e-1640.88NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CHAVU3.654e-1538.76NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ANASP1.813e-1440.91NAD(P)H-quinone oxidoreductase chain 6 OS=Anabaena... [more]
NU6C_CHAGL8.999e-1435.66NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F05-K10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069466 ID=CX069466; Name=CX069466; organism=Citrus sinensis; type=EST; length=873bp
CATCATTAACCAACTCCGTACCAATTTCGATTCATTTCAATCTGAACAAT
AATAATAATGCAAGTGATTTGGTTGCTTAGAATATACCAGGTACGGAACA
AAAGAATCCATTTGGTAATAGATCGAATAAAAAAAATTCTATTTTGATTT
TCTATTGATCTGTGAATAGTATTCAACTAGACTTTTCAAGAATTTAAGGG
AAATGAATGTGATAACACATAATGAATGTGATAACACATAAAAAGTCGAA
TTGGGATTGCTGTTCCTAGTTATAAAGATTTGTTATTGACGCGCCACGGC
AATTGCACCTATTAAAGCAACTAAAAGAATTATTGAAACGAGTTCAAATG
GAAGAAAAAAGTCTGTTGATAAATGAATTCCAATTTGTTGACTATTACTT
ATCAAATCTTGTTCAATAATCTGGTTGGCTCGTGTAGTCCAAATAATCCC
GTACCACGATGTATCGAGAATAGTAGTGATTAGCGAAAAAAAAATACTTG
TACAAACCAGAGAAGTAAGACCATCGCCAATAGTCCAAAGATTCAACTGA
AAATCTTTGGAATAGTCTGAGCCGTTCATGAACATTACAGCAAATATGAT
TAAAACATTTACAGCTCCCACGTAAATAAGGAGTTGCGCGGCAGCTACAA
AATGGGAATTTGATAGAATATAGAATAATGATATACAAACAAGAACCAAT
CCCAAGGAAAAGGCAGAATAAATTGGGTTGGTAAATAATACCACTCCCAG
ACCTCCTAATATAAGACCCGATCCCAGAAAAACTAAAATAAAATCGTGTA
TTGGTCCAGGCAAATCCATTATATTAAAATAGGAGATAAATAAATCGAAA
TCTTTTTCATGACCTTATTGAGC
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