CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_MICAN (NAD(P)H-quinone oxidoreductase subunit J OS=Microcystis aeruginosa (strain NIES-843) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.819e-50
Identity = 84/156 (53.85%), Postives = 115/156 (73.72%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G  S WL ++G  H++L  D+ G+E ++++ +    +A  LY YG+NYL+ Q AYD+ PG  L S YHL ++   VD P EV +KVF PR NP++ SV+W+WK+A++QERESYDM GI+Y+ HP L RILMPE W+GWPLRKDY++P FYE+QDAY
Sbjct:   12 GPTSIWLSENGFEHQALEADHSGVELIKVEADFLIPLATALYAYGFNYLQCQGAYDLGPGKELVSFYHLVKVTDNVDSPVEVRLKVFLPRDNPRVASVYWIWKAADWQERESYDMFGIIYEGHPHLKRILMPEDWVGWPLRKDYVSPEFYELQDAY 167          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_GLOVI (NAD(P)H-quinone oxidoreductase subunit J OS=Gloeobacter violaceus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.351e-49
Identity = 86/161 (53.42%), Postives = 116/161 (72.05%), Query Frame = 2
Query:  314 IKKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            I+ + G +S  L   GL H   G D + IE ++++PE   +VA  LY  G+NYL  QC +D  PG  L S+YHLT++    D+P EV IKVF PR NP++PSV+W+WK+A++QERES+DM GI+Y+ HP L RILMPE W+GWP+RKDY+ P+FYE+QDAY
Sbjct:   16 IELVTGPISDALKARGLPHELTGLDNRKIEIIKVEPEHLIAVARALYDDGFNYLACQCGFDEGPGDSLGSMYHLTKLSDSADRPPEVRIKVFLPRDNPRVPSVYWIWKTADWQERESFDMYGIIYEGHPNLIRILMPEDWVGWPMRKDYVTPDFYELQDAY 176          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNY3 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechocystis sp. (strain PCC 6803) GN=ndhJ PE=1 SV=4)

HSP 1 Score: 194.897 bits (494), Expect = 4.377e-49
Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL  +G  H+SL  D+ G+E +Q++ +    +   LY YG+NYL+ Q AYD  PG  L S YHL ++      PEEV +KVF PR NP +PSV+W+WK+A++QERE YDM GI+Y+ HP L RILMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   24 GPVSTWLTTNGFEHQSLTADHLGVEMVQVEADLLLPLCTALYAYGFNYLQCQGAYDEGPGKSLVSFYHLVKLTEDTRNPEEVRLKVFLPRENPVVPSVYWIWKAADWQERECYDMFGIVYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 179          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_NOSP7 (NAD(P)H-quinone oxidoreductase subunit J OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.466e-49
Identity = 83/156 (53.21%), Postives = 113/156 (72.44%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G++S WL ++G  H  L  D  G+E +++  +     A  LY YG+NYL+ Q   D+ PG  L S+YHL ++    D+PEEV +KVF PR NP +PSV+W+WK+A++QERESYDM GI+Y+ HP L R+LMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   21 GKVSQWLTENGFDHEFLAPDKNGVEIIKVSADFLLPTATALYAYGFNYLQCQGGIDLGPGQELVSMYHLIKVGDNSDRPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRLLMPEDWVGWPLRKDYISPDFYELQDAY 176          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNJA (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.705e-48
Identity = 83/157 (52.87%), Postives = 115/157 (73.25%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +G +S +L  +G  H+ LG D  G+E L+++ +    V   LY YG+NYL  QC YD+  G  L S+YHL ++  G D+P+EV ++V  PR +P++PSV+W+WKSA++QERE+YDM GI+++ HP L RILMPE WIGWPLRKDYI P+FYE+QDAY
Sbjct:   25 RGPVSQFLADNGFDHQYLGRDAAGVELLEVERDFLLPVCTALYAYGFNYLECQCGYDLGAGQPLVSLYHLIKLADGADRPQEVRVQVKLPRQDPRVPSVYWIWKSADWQERETYDMYGIIFEGHPNLKRILMPEDWIGWPLRKDYITPDFYELQDAY 181          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNP2 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 85/156 (54.49%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S  L ++G  H SL  D+ GIE +++  +    +   LY +G+NYL+ Q AYD+ PG  L S YHL ++   V  PEEV +KVF PR NP +PSV+W+WK A++QERESYDM GI+Y+ HP L RILMPE WIGWPLRKDY++P+FYE+QDAY
Sbjct:   19 GAVSQLLTENGFSHESLERDHSGIEIIKVDADLLIPLCTALYAFGFNYLQCQGAYDLGPGKELVSFYHLLKVGDNVTDPEEVRVKVFLPRENPVVPSVYWIWKGADWQERESYDMYGIVYEGHPNLKRILMPEDWIGWPLRKDYVSPDFYELQDAY 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNE7 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus elongatus (strain PCC 7942) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.320e-48
Identity = 83/156 (53.21%), Postives = 114/156 (73.08%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL ++G  + +L  D+ G+E +Q+  E    +A  L+ YG+NYL+ Q  YD+ PG  L S YHLT++     QP+EV +KVF PR +PK+PSVFW+WK A++QERE++DM GI ++ HP L RILMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   17 GPVSRWLSENGFENTALERDHLGVEIVQVDREVLLPIAAALFAYGFNYLQCQGGYDLGPGQDLVSFYHLTKVSDDASQPQEVRVKVFLPRHDPKVPSVFWIWKGADWQERETFDMYGIQFEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 172          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNJB (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. GN=ndhJ PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.078e-47
Identity = 82/157 (52.23%), Postives = 115/157 (73.25%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +G +S +L  +G  H+ LG D  G+E L+++ +    +   LY YG+NYL  QC YD+  G  L S+YHL ++  G D+P+EV ++V  PR +P++PSV+W+WKSA++QERE+YDM GI+++ HP L RILMPE WIGWPLRKDYI P+FYE+QDAY
Sbjct:   27 RGPVSQFLADNGFEHQYLGRDAAGVELLEVERDFLLPLCTALYAYGFNYLECQCGYDLGAGQPLVSLYHLIKLSDGADRPQEVRLQVKLPRQDPRLPSVYWIWKSADWQERETYDMYGIVFEGHPNLKRILMPEDWIGWPLRKDYITPDFYELQDAY 183          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNP6 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.402e-47
Identity = 82/156 (52.56%), Postives = 113/156 (72.44%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL ++G  + +L  D+ G+E +Q+  E    +A  L+ YG+NYL+ Q  YD+ PG  L S YHLT++     QP+EV +KVF PR +PK+P VFW+WK A++QERE++DM GI ++ HP L RILMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   17 GPVSRWLSENGFENTALERDHLGVEIVQVDREVLLPIAAALFAYGFNYLQCQGGYDLGPGQDLVSFYHLTKVSDDASQPQEVRVKVFLPRHDPKVPPVFWIWKGADWQERETFDMYGIQFEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 172          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_THEEB (NAD(P)H-quinone oxidoreductase subunit J OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.009e-45
Identity = 83/156 (53.21%), Postives = 108/156 (69.23%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +   L    L   SLG D  G+E +++  +   +V   LY  G+NYLR Q AYD  PG  L S YHL ++    D+P EV IKVF PR +P++PSV+W+WK+A++QERESYDM GI+Y+ HP L RILMPE W+GWPLRKDYI P+FYE+Q+AY
Sbjct:   13 GPVGRLLQSQNLSVESLGRDASGVEMIKVDRDRLLAVCQTLYADGFNYLRCQAAYDSGPGQDLVSTYHLIKLSDNADRPPEVRIKVFVPRDDPRVPSVYWIWKTADWQERESYDMFGIVYEGHPNLKRILMPEDWVGWPLRKDYITPDFYELQEAY 168          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_MICAN8.819e-5053.85NAD(P)H-quinone oxidoreductase subunit J OS=Microc... [more]
NDHJ_GLOVI3.351e-4953.42NAD(P)H-quinone oxidoreductase subunit J OS=Gloeob... [more]
NDHJ_SYNY34.377e-4954.49NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_NOSP77.466e-4953.21NAD(P)H-quinone oxidoreductase subunit J OS=Nostoc... [more]
NDHJ_SYNJA3.705e-4852.87NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_SYNP24.839e-4854.49NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_SYNE76.320e-4853.21NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_SYNJB1.078e-4752.23NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_SYNP62.402e-4752.56NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_THEEB1.009e-4553.21NAD(P)H-quinone oxidoreductase subunit J OS=Thermo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
back to top