CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNR3 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain RCC307) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.020e-31
Identity = 73/170 (42.94%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  296 NQNVGEIKKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVD--QPEEVCIKVFAPRSNP-KIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            NQ++ E  +  G LS WL   G  H+ LG D+ GIE L ++P     VA  L   G++YL+ Q  +D  PG  L S YHL ++  G D     EV ++V   R     +PS++ +++ A++QERE++D+ GI Y  HP   R+LMPE W+G+PLRKDY+ P+FYE+QDAY
Sbjct:    9 NQDLPEAPQA-GPLSQWLTSQGFDHQILGNDHLGIERLGVEPLALPLVATALKSKGFDYLQVQGGFDQGPGEPLVSFYHLVQVG-GSDGASTAEVRLEVSLARDGDLTVPSLYPLFRGADWQERETFDLFGINYSGHPHPKRLLMPEDWVGYPLRKDYVQPDFYELQDAY 176          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNPX (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain WH8102) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.564e-30
Identity = 68/165 (41.21%), Postives = 98/165 (59.39%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVD--------QPEEVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL + G  H++L  D+ GIE + +       +A  L   G++YL+    YD  PG  L   YHL  +   ++        Q  EV +KVF  R   P +PS++ +++ A++QERE++DM GI +D HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   24 GPVSQWLQQQGFEHQALEPDHVGIEQIGVDAAVLPIIAAALKSNGFDYLQCHGGYDEGPGERLVCFYHLLAMAEQLEAMASDPAAQLREVRLKVFLSREGTPVLPSIYGLFRGADWQERETFDMYGIQFDGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAY 188          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PROMT (NAD(P)H-quinone oxidoreductase subunit J OS=Prochlorococcus marinus (strain NATL2A) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.043e-30
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 2
Query:  317 KKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRI-EYGVD-QPEEVCIKVFAPRSNP-KIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +K+ G +S WL  +G  +  L  D+ GIE ++I P +  ++   L   G+NYL+ Q  YD  PG  +   Y+L  + E   D  P EV +KVF  R+    +PS++ +++ A++QERE++DM G+ +  HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   11 EKISGPISDWLSNNGFENIPLKEDHLGIEVIKISPNNLLTIVEALKNDGFNYLQCQGGYDEGPGLNIVCFYNLIEMNELKEDISPREVRLKVFLDRNGDLTVPSLYSLFRGADWQERETFDMYGVNFQGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAY 173          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PROM3 (NAD(P)H-quinone oxidoreductase subunit J OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.043e-30
Identity = 68/169 (40.24%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRI-----EYGVDQPE-------EVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL K G  H+ L  D+ G+E + ++      +   L   G++YL+ Q  YD  PG  L   YHL  +     + GV           EV +KVF  R + P +PS++ +++ A++QERE++DM GI ++ HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   17 GPISRWLNKQGFEHQLLDPDHLGVEVIGVESMFLQVIVAALKADGFDYLQCQGGYDEGPGQQLVCFYHLVAMAEMVAKMGVGDSSSEAAKVREVRLKVFLSREDTPSLPSIYGLFRGADWQERETFDMFGINFEGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAY 185          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PROM1 (NAD(P)H-quinone oxidoreductase subunit J OS=Prochlorococcus marinus (strain NATL1A) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.043e-30
Identity = 69/163 (42.33%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  317 KKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRI-EYGVD-QPEEVCIKVFAPRSNP-KIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +K+ G +S WL   G  +  L  D+ GIE ++I P +  S+   L   G+NYL+ Q  YD  PG  +   Y+L  + E   D  P EV +KVF  R+    +PS++ +++ A++QERE++DM G+ +  HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   11 EKISGPISDWLSNKGFENIPLKEDHLGIEVIKISPNNLLSIVEALKNDGFNYLQCQGGYDEGPGLNIVCFYNLIEMNELKEDISPREVRLKVFLDRNGDLTVPSLYSLFRGADWQERETFDMYGVNFKGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAY 173          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNS3 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain CC9311) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.668e-30
Identity = 66/161 (40.99%), Postives = 96/161 (59.63%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTR----IEYGVDQPEEVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL + G  H +L  D+ G+E + ++      +   L   G++YL+ Q  YD  PG  L   YH       I+   D   EV +KVF  R   P +PS++ +++ A++QERE++DM GI ++ HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   23 GPVSQWLNQQGFDHDALEPDHLGVEQIGVEALFLQVITAALKSNGFDYLQCQGGYDEGPGERLVCFYHFVAMAELIDGKRDNLREVRLKVFLSREGEPSLPSIYGLFRGADWQERETFDMFGIHFEGHPHPKRLLMPEDWTGWPLRKDYVQPDFYEMQDAY 183          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PROMM (NAD(P)H-quinone oxidoreductase subunit J OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.762e-30
Identity = 67/169 (39.64%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRI-----EYGVDQPE-------EVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL + G  H+ L  D+ G+E + ++      +   L   G++YL+ Q  YD  PG  L   YHL  +     + GV           EV +KVF  R + P +PS++ +++ A++QERE++DM GI ++ HP   R+LMPE W GWPLRKDY+ P+FYE+QDAY
Sbjct:   17 GPVSRWLNQQGFEHQLLDPDHLGVEVIGVESMFLQVIVAALKADGFDYLQCQGGYDEGPGQQLVCFYHLVAMAEMVAKMGVGDSSSEAAKVREVRLKVFLSREDIPSLPSIYGLFRGADWQERETFDMFGINFEGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAY 185          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SYNS9 (NAD(P)H-quinone oxidoreductase subunit J OS=Synechococcus sp. (strain CC9902) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.121e-28
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVD--------QPEEVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S WL   G  H  L  D+ G+E + ++      +   +  +G++YL+ Q  YD  PG  L   YH   +   V+        +  EV +KVF  R   P +PS++ +++ A++QERE++DM GI ++ HP   R+LMPE W GWPLRKDY+ P+FYE+QDA+
Sbjct:   29 GPVSQWLNTQGFDHDVLDPDHVGVEQIGVESAVLPIIVAAIKSHGFDYLQCQGGYDEGPGERLVCFYHFIAMAEQVEAMTAGRPHELREVRLKVFLSREGTPSLPSIYGLFRGADWQERETFDMYGIEFEGHPHPKRLLMPEDWKGWPLRKDYVQPDFYEMQDAF 193          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_VITVI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Vitis vinifera GN=ndhK PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.492e-22
Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 3
Query:    3 IYEDRIRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFFKYKSSVSSPEFIN 203
            IYEDRIR Q+ENR FT  TNHKF V  ST+TGNYDQ LLYQ PSTSEIP ETFFKYKSSVSSPEF+N
Sbjct:  161 IYEDRIRSQQENRCFT--TNHKFHVGRSTHTGNYDQRLLYQSPSTSEIPLETFFKYKSSVSSPEFVN 225          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_HELAN (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Helianthus annuus GN=ndhK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 52/67 (77.61%), Postives = 55/67 (82.09%), Query Frame = 3
Query:    3 IYEDRIRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFFKYKSSVSSPEFIN 203
            IY DRI  QRENR FT  TNHKF+V  S +TGNYDQG LYQPPSTSEIPPETFFKYKSSVSS E +N
Sbjct:  161 IYPDRIMSQRENRCFT--TNHKFQVGHSIHTGNYDQGFLYQPPSTSEIPPETFFKYKSSVSSHELVN 225          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_SYNR37.020e-3142.94NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_SYNPX1.564e-3041.21NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_PROMT2.043e-3041.72NAD(P)H-quinone oxidoreductase subunit J OS=Prochl... [more]
NDHJ_PROM32.043e-3040.24NAD(P)H-quinone oxidoreductase subunit J OS=Prochl... [more]
NDHJ_PROM12.043e-3042.33NAD(P)H-quinone oxidoreductase subunit J OS=Prochl... [more]
NDHJ_SYNS32.668e-3040.99NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHJ_PROMM7.762e-3039.64NAD(P)H-quinone oxidoreductase subunit J OS=Prochl... [more]
NDHJ_SYNS91.121e-2838.18NAD(P)H-quinone oxidoreductase subunit J OS=Synech... [more]
NDHK_VITVI3.492e-2280.60NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_HELAN1.733e-2177.61NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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