CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_FAGEA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=ndhJ PE=3 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.625e-86
Identity = 146/158 (92.41%), Postives = 151/158 (95.57%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDV PGGLLASVYHLTRIE GVDQPEEVCIKVF PR NP+IPSVFWVWKS +FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVEPGGLLASVYHLTRIESGVDQPEEVCIKVFVPRRNPRIPSVFWVWKSVDFQERESYDMLGIFYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SOYBN (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Glycine max GN=ndhJ PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 7.637e-86
Identity = 141/158 (89.24%), Postives = 153/158 (96.84%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLS+WLVKHGL+HRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTR+EYG+DQPEEVCIK+F  R NP+IPS+FWVWKSA+FQE+ESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSSWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRIPSIFWVWKSADFQEKESYDMLGISYDNHPRLRRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_POPTR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Populus trichocarpa GN=ndhJ PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.974e-86
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV-DQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            M+G LSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+ DQPEEVCIKVFAPR NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MRGPLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASIYHLTRIEYGILDQPEEVCIKVFAPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 159          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_POPAL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Populus alba GN=ndhJ PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.974e-86
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV-DQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            M+G LSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLAS+YHLTRIEYG+ DQPEEVCIKVFAPR NP+IPSVFWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MRGPLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASIYHLTRIEYGILDQPEEVCIKVFAPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 159          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CHLSC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Chloranthus spicatus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.303e-85
Identity = 144/158 (91.14%), Postives = 153/158 (96.84%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDYQGIETLQIKPEDW+S+AVI Y+YGYNYLRSQCAYD+APGGLLASVYHLTRI+YGVDQPEEVCIKVFAPR NP+IPSVFW+WKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYQGIETLQIKPEDWYSIAVISYVYGYNYLRSQCAYDIAPGGLLASVYHLTRIQYGVDQPEEVCIKVFAPRRNPRIPSVFWIWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PLAOC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Platanus occidentalis GN=ndhJ PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIK EDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVFA R NP+IPSVFW+WKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKSEDWHSIAVISYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFAARRNPRIPSVFWIWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LACSA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lactuca sativa GN=ndhJ PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LSAWLVKHGL+HRSLGFDYQGIETLQIKP DWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG DQPEEVCIKVFAPR +P+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGHLSAWLVKHGLIHRSLGFDYQGIETLQIKPGDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGADQPEEVCIKVFAPRRDPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ILLOL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Illicium oligandrum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDYQGIETLQIKPEDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVFA R NP+IPSVFW+WKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYQGIETLQIKPEDWHSIAVISYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFAKRRNPRIPSVFWIWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_COFAR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Coffea arabica GN=ndhJ PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.701e-85
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIK EDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVF  R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDY+APNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKSEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFVSRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYVAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_TOBAC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nicotiana tabacum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.222e-85
Identity = 145/158 (91.77%), Postives = 151/158 (95.57%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRIE GVDQPEEVCIKVFA R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEDGVDQPEEVCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_FAGEA2.625e-8692.41NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SOYBN7.637e-8689.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_POPTR9.974e-8691.82NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_POPAL9.974e-8691.82NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CHLSC1.303e-8591.14NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_PLAOC1.701e-8591.77NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LACSA1.701e-8591.14NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ILLOL1.701e-8591.77NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_COFAR1.701e-8591.14NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_TOBAC2.222e-8591.77NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
back to top