CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOSE (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli (strain SE11) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOLU (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOLI (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli (strain K12) GN=nuoC PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   88 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 171
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOLC (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOL6 (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O6 GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOL5 (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   88 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 171
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOK1 (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O1:K1 / APEC GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECOHS (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O9:H4 (strain HS) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECODH (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli (strain K12 / DH10B) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_ECO8A (NADH-quinone oxidoreductase subunit C/D OS=Escherichia coli O8 (strain IAI1) GN=nuoC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE++D+ GI +D HP L RI+MP++W G PLRKDY A
Sbjct:   92 PAADFSVFYHLISI----DRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTWKGHPLRKDYPA 175
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NUOCD_ECOSE7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOLU7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOLI7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOLC7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOL67.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOL57.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOK17.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECOHS7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECODH7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]
NUOCD_ECO8A7.299e-1238.64NADH-quinone oxidoreductase subunit C/D OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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