CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_PECCP (NADH-quinone oxidoreductase subunit C/D OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=nuoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 33/86 (38.37%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  509 GLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            GL A+ Y +      +++  ++ +KV    S+  +P+V  ++ +AN+ ERE+++M GI ++ HP L RI+MP +W G PLRKDY A
Sbjct:   89 GLPAADYSVFYHIISIERNRDIMLKVALAESDLHVPTVTKLFPNANWYERETWEMFGITFNGHPHLTRIMMPHTWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_KLEP7 (NADH-quinone oxidoreductase subunit C/D OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=nuoC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  I    D+  ++ +KV    ++  +P+   ++ +AN+ ERE+++M GI +D HP L RI+MP +W G PLRKDY A
Sbjct:   91 DGLPAADFSVFYHLISI----DRNRDIMLKVALSENDLHLPTFTKLFPNANWYERETWEMFGITFDGHPNLRRIMMPPTWEGHPLRKDYPA 177          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_SOYBN (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Glycine max GN=ndhK PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 IYEDRIRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFF 164
            IYE+++  QRENR FT  TNHKF +  ST+TGNY Q L YQ PSTSEIP +TFF
Sbjct:  161 IYENQMSSQRENRCFT--TNHKFHIGYSTHTGNYGQELFYQLPSTSEIPSDTFF 212          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_LOTJA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lotus japonicus GN=ndhK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    3 IYEDR---IRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFFKYKSSVSSP--EFIN 203
            I+ED+   +  QRENR FT  TNHKF V  ST+TGNYDQ L +QPPSTSEI  +TFF+Y+     P  E +N
Sbjct:  161 IHEDQTSSLSSQRENRCFT--TNHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNEIVN 230          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_BUCAT (NADH-quinone oxidoreductase subunit C/D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=nuoC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + IKV    ++  +P+   ++ +AN+ ERE++DM GI+++NHP L RI+MP +W G PLRK+Y A
Sbjct:  100 YHLISIERNSD----IMIKVPLLENDLILPTFTGLFPNANWYERETWDMFGIIFNNHPNLTRIIMPSTWKGHPLRKNYSA 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_BUCAI (NADH-quinone oxidoreductase subunit C/D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + IKV    ++  +P+   ++ +AN+ ERE++DM GI+++NHP L RI+MP +W G PLRK+Y A
Sbjct:  100 YHLISIERNSD----IMIKVPLLENDLILPTFTGLFPNANWYERETWDMFGIIFNNHPNLTRIIMPSTWKGHPLRKNYSA 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_BUCA5 (NADH-quinone oxidoreductase subunit C/D OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=nuoC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + IKV    ++  +P+   ++ +AN+ ERE++DM GI+++NHP L RI+MP +W G PLRK+Y A
Sbjct:  100 YHLISIERNSD----IMIKVPLLENDLILPTFTGLFPNANWYERETWDMFGIIFNNHPNLTRIIMPSTWKGHPLRKNYSA 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_PSEMY (NADH-quinone oxidoreductase subunit C/D OS=Pseudomonas mendocina (strain ymp) GN=nuoC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  +E   D    + +KV     +  +P+   +W +AN+ ERE +D+ GI +  HP L RI+MP +W G PLRKDY A
Sbjct:   94 YHLMSLERNSD----LMVKVALSERDLNLPTATGIWPNANWYEREVWDLYGITFQGHPHLTRIMMPPTWEGHPLRKDYPA 169          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_BUCBP (NADH-quinone oxidoreductase subunit C/D OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  524 VYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            VYH   I    D    + +K+        +P++  ++ +AN+ ERE +DM GI ++NHP L RILMP++W+G PLRKD+ A
Sbjct:   97 VYHFISINRNSD----IILKIALLEEKLSLPTLTKLYPNANWYEREIWDMFGISFENHPNLIRILMPKTWVGHPLRKDHPA 173          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUBCD_PELCD (NADH-quinone oxidoreductase subunit B/C/D OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoBCD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 2
Query:  503 PGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPK--IPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDY 760
            P   L  VYHL   E          ++V AP  N +  +PS+  +W +AN+ ERE++DM G+ +  HP L RILMPE W G PLRK +
Sbjct:  291 PAHDLTMVYHLLSFE------RAGYLRVKAPLRNDRAEVPSITGLWPAANWYEREAFDMFGVRFAGHPDLRRILMPEGWQGHPLRKSH 372          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NUOCD_PECCP1.626e-1138.37NADH-quinone oxidoreductase subunit C/D OS=Pectoba... [more]
NUOCD_KLEP71.626e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Klebsie... [more]
NDHK_SOYBN1.626e-1164.81NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_LOTJA1.626e-1155.56NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOCD_BUCAT2.124e-1143.75NADH-quinone oxidoreductase subunit C/D OS=Buchner... [more]
NUOCD_BUCAI2.124e-1143.75NADH-quinone oxidoreductase subunit C/D OS=Buchner... [more]
NUOCD_BUCA52.124e-1143.75NADH-quinone oxidoreductase subunit C/D OS=Buchner... [more]
NUOCD_PSEMY2.774e-1141.25NADH-quinone oxidoreductase subunit C/D OS=Pseudom... [more]
NUOCD_BUCBP2.774e-1140.74NADH-quinone oxidoreductase subunit C/D OS=Buchner... [more]
NUBCD_PELCD2.774e-1142.05NADH-quinone oxidoreductase subunit B/C/D OS=Pelob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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