CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_PHAVU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Phaseolus vulgaris GN=ndhK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 36/54 (66.67%), Postives = 37/54 (68.52%), Query Frame = 3
Query:    3 IYEDRIRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFF 164
            IYED I  QRENR FT   NHKF V  ST TGNY Q   YQPPSTSEI  +TFF
Sbjct:  161 IYEDPISFQRENRCFTI--NHKFHVGYSTYTGNYGQEFFYQPPSTSEIASDTFF 212          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPY (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPS (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pseudotuberculosis GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPP (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis (strain Pestoides F) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPN (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPG (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPE (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPB (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERPA (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_YERP3 (NADH-quinone oxidoreductase subunit C/D OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.622e-11
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  IE   D    + +KV     +  + +   ++ +AN+ ERE+++M GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:   99 YHLLSIERNRD----IMLKVALSEKDLHVSTATKIFPNANWYERETWEMFGITFDGHPHLTRIMMPQSWEGHPLRKDYPA 174          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHK_PHAVU2.774e-1166.67NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOCD_YERPY3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPS3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPP3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPN3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPG3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPE3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPB3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERPA3.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]
NUOCD_YERP33.622e-1142.50NADH-quinone oxidoreductase subunit C/D OS=Yersini... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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