CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_SALEP (NADH-quinone oxidoreductase subunit C/D OS=Salmonella enteritidis PT4 (strain P125109) GN=nuoC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  IE   D    + +KV    ++ ++P+   ++ +AN+ ERE+++M GI  + HP L RI+MP++W G PLRKDY A
Sbjct:   85 DGLPAADFSVFYHLISIERNRD----IMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMMPQTWEGHPLRKDYPA 171          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_SALDC (NADH-quinone oxidoreductase subunit C/D OS=Salmonella dublin (strain CT_02021853) GN=nuoC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  IE   D    + +KV    ++ ++P+   ++ +AN+ ERE+++M GI  + HP L RI+MP++W G PLRKDY A
Sbjct:   85 DGLPAADFSVFYHLISIERNRD----IMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMMPQTWEGHPLRKDYPA 171          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_SALCH (NADH-quinone oxidoreductase subunit C/D OS=Salmonella choleraesuis GN=nuoC PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  IE   D    + +KV    ++ ++P+   ++ +AN+ ERE+++M GI  + HP L RI+MP++W G PLRKDY A
Sbjct:   85 DGLPAADFSVFYHLISIERNRD----IMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMMPQTWEGHPLRKDYPA 171          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_SALAR (NADH-quinone oxidoreductase subunit C/D OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  IE   D    + +KV    ++ ++P+   ++ +AN+ ERE+++M GI  + HP L RI+MP++W G PLRKDY A
Sbjct:   89 DGLPAADFSVFYHLISIERNRD----IMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMMPQTWEGHPLRKDYPA 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_SALA4 (NADH-quinone oxidoreductase subunit C/D OS=Salmonella agona (strain SL483) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  494 DVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            D  P    +  YHL  IE   D    + +KV    ++ ++P+   ++ +AN+ ERE+++M GI  + HP L RI+MP++W G PLRKDY A
Sbjct:   89 DGLPAADFSVFYHLISIERNRD----IMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMMPQTWEGHPLRKDYPA 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOCD_AERHH (NADH-quinone oxidoreductase subunit C/D OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=nuoC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 35/80 (43.75%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  527 YHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIA 766
            YHL  I+   D    + +KV     +  +P+V   + +AN+ ERE +D++GI +D HP L RI+MP+SW G PLRKDY A
Sbjct:  101 YHLISIDRNAD----LMLKVPLKEGDLTLPTVSRHFPNANWYEREVWDLMGINFDGHPHLTRIMMPKSWQGHPLRKDYPA 176          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHK_WHEAT (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Triticum aestivum GN=ndhK PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 3
Query:    3 IYEDRIRLQRENRSFTFTTNHKFRVVCSTNTGNYDQGLLYQPPSTSEIPPETFFKYKSSVSSPEFIN 203
            I EDR   Q +NR FT  T+HK  V  ST+TG Y+Q LLYQ PST +I  ETFFK KSSV S + +N
Sbjct:  161 IVEDRTLSQNKNRCFT--TSHKLYVRRSTHTGTYEQELLYQSPSTLDISSETFFKSKSSVPSYKLVN 225          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NUOC_NITEC (NADH-quinone oxidoreductase subunit C OS=Nitrosomonas eutropha (strain C91) GN=nuoC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  518 ASVYHLTRIEYGVDQPEEVCIKVFAPRSN-PKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQ 787
            A VYHL  +++       + I+VF   +  P + SV  +W SAN+ ERE++D+ GI+++NHP L RIL    +IG P RKD+      E+Q
Sbjct:   85 AVVYHLLSVKHN----HRLRIRVFVDDNEFPMLDSVIHIWPSANWYEREAFDLFGIVFNNHPDLRRILTDYGFIGNPFRKDFPLSGHMEMQ 171          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NUOCD_SALEP6.179e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Salmone... [more]
NUOCD_SALDC6.179e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Salmone... [more]
NUOCD_SALCH6.179e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Salmone... [more]
NUOCD_SALAR6.179e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Salmone... [more]
NUOCD_SALA46.179e-1138.46NADH-quinone oxidoreductase subunit C/D OS=Salmone... [more]
NUOCD_AERHH6.179e-1143.75NADH-quinone oxidoreductase subunit C/D OS=Aeromon... [more]
NDHK_WHEAT6.179e-1156.72NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NUOC_NITEC8.070e-1139.56NADH-quinone oxidoreductase subunit C OS=Nitrosomo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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