CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LOTJA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lotus japonicus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.950e-85
Identity = 142/158 (89.87%), Postives = 152/158 (96.20%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDV+PGGLLASVYHLTRIE G+ QPEEVCIK+F PR+NP+IPS+FWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVSPGGLLASVYHLTRIECGIYQPEEVCIKIFVPRNNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_JASNU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Jasminum nudiflorum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.444e-85
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVK GL+HRSLGFDYQGIETLQIKP+DWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG DQPEEVCIKVFA R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKRGLIHRSLGFDYQGIETLQIKPKDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGGDQPEEVCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CERDE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Ceratophyllum demersum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.103e-84
Identity = 143/158 (90.51%), Postives = 151/158 (95.57%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGR SAWLVKH LVHRSLGFDYQGIETLQIKPEDW+S+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVFAPR NP+IPSVFW+WKSA+FQERESYDM GI YDNHPRL RILMPESWIGWPLRKDYIAP+FYEIQDAY
Sbjct:    1 MQGRSSAWLVKHELVHRSLGFDYQGIETLQIKPEDWYSIAVISYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFAPRGNPRIPSVFWIWKSADFQERESYDMFGISYDNHPRLKRILMPESWIGWPLRKDYIAPDFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SOLBU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum bulbocastanum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.440e-84
Identity = 143/158 (90.51%), Postives = 151/158 (95.57%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRIE GVDQPEE+CIKVFA R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQ+A+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEDGVDQPEELCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQEAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_NUPAD (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nuphar advena GN=ndhJ PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.440e-84
Identity = 141/158 (89.24%), Postives = 152/158 (96.20%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGR SAWLVKH LVHRSLGFDYQGIETLQIKPEDW+S+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVF PRSNP+IPSVFW+WKSA+FQERESYDMLGI YDNHPR+ RILMPESW+GWPLRKDYIAPNFYE+QDA+
Sbjct:    1 MQGRSSAWLVKHELVHRSLGFDYQGIETLQIKPEDWYSIAVISYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFVPRSNPRIPSVFWIWKSADFQERESYDMLGISYDNHPRMKRILMPESWVGWPLRKDYIAPNFYELQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SOLTU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum tuberosum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.209e-84
Identity = 143/158 (90.51%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRIE  VDQPEE+CIKVFA R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEDDVDQPEELCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SOLLC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Solanum lycopersicum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.191e-84
Identity = 143/158 (90.51%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHS+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRIE GV QPEE+CIKVFA R NP+IPSVFWVWKS +FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEDGVAQPEELCIKVFASRRNPRIPSVFWVWKSVDFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ACOCL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Acorus calamus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.336e-84
Identity = 142/158 (89.87%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDYQGIE LQIKPEDW S+AVI Y+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YGVDQPEEVCIKVFAPR NPKIPSVFW+W+SA+FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYQGIEILQIKPEDWDSIAVISYVYGYNYLRSQCAYDVAPGGFLASVYHLTRIQYGVDQPEEVCIKVFAPRRNPKIPSVFWIWRSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ACOAM (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Acorus americanus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.336e-84
Identity = 142/158 (89.87%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDYQGIE LQIKPEDW S+AVI Y+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YGVDQPEEVCIKVFAPR NPKIPSVFW+W+SA+FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYQGIEILQIKPEDWDSIAVISYVYGYNYLRSQCAYDVAPGGFLASVYHLTRIQYGVDQPEEVCIKVFAPRRNPKIPSVFWIWRSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_AMBTC (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Amborella trichopoda GN=ndhJ PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.219e-83
Identity = 142/158 (89.87%), Postives = 151/158 (95.57%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDYQGIETLQIK EDW+S+AVI Y+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVFA R NP+IPSVFW+WKS++FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYQGIETLQIKSEDWYSIAVISYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIQYGVDQPEEVCIKVFAQRRNPRIPSVFWIWKSSDFQERESYDMLGIYYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_LOTJA4.950e-8589.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_JASNU8.444e-8591.14NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CERDE1.103e-8490.51NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SOLBU1.440e-8490.51NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_NUPAD1.440e-8489.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SOLTU3.209e-8490.51NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SOLLC4.191e-8490.51NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ACOCL9.336e-8489.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ACOAM9.336e-8489.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_AMBTC1.219e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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