CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PHAVU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Phaseolus vulgaris GN=ndhJ PE=3 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.592e-83
Identity = 137/158 (86.71%), Postives = 152/158 (96.20%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLS+WLVKHGL+HRSLGFDY G+ETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYG++QPEEVCIK+F  R NP+IPS+FWVWKSA+FQE+ESYDMLGI YD+HPRL RILMPE+WIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSSWLVKHGLIHRSLGFDYLGVETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGINQPEEVCIKIFVSRKNPRIPSIFWVWKSADFQEQESYDMLGISYDSHPRLRRILMPENWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LOBMA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lobularia maritima GN=ndhJ PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.548e-83
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LEPVR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lepidium virginicum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.548e-83
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CRUWA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Crucihimalaya wallichii GN=ndhJ PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.548e-83
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ARATH (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Arabidopsis thaliana GN=ndhJ PE=3 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.548e-83
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PELHO (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Pelargonium hortorum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.633e-83
Identity = 142/158 (89.87%), Postives = 149/158 (94.30%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LSAWLVK  LVHRSLGFDYQGIETL+IK EDWHSVAVILY+YGYNYLRSQCAYDVAPGGLLASVYH TRIEYG+DQPEEVCIKVF  RSNP+IPS+FWVWKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGPLSAWLVKRRLVHRSLGFDYQGIETLEIKSEDWHSVAVILYVYGYNYLRSQCAYDVAPGGLLASVYHFTRIEYGIDQPEEVCIKVFLARSNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_OLIPU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Olimarabidopsis pumila GN=ndhJ PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 6.051e-83
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVHQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ARAHI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Arabis hirsuta GN=ndhJ PE=3 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 6.051e-83
Identity = 141/158 (89.24%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GL+HRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLIHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFMHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_AETCO (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Aethionema cordifolium GN=ndhJ PE=3 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 1.032e-82
Identity = 142/158 (89.87%), Postives = 148/158 (93.67%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSN +IPSVFWVWKSA+FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNSRIPSVFWVWKSADFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PIPCE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Piper cenocladum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.299e-82
Identity = 139/158 (87.97%), Postives = 150/158 (94.94%), Query Frame = 2 
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKH LVHRSLGFDY+GIETLQIK EDW+S+AVILY YGYNYLRSQCAYD APGGLLASVYHLTRI+YG+DQPEEVCIKVF PR+N +IPSVFW+WKSA+FQERESYDMLGI Y+NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHELVHRSLGFDYRGIETLQIKSEDWYSIAVILYAYGYNYLRSQCAYDAAPGGLLASVYHLTRIQYGIDQPEEVCIKVFVPRTNTRIPSVFWIWKSADFQERESYDMLGISYENHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_PHAVU1.592e-8386.71NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LOBMA3.548e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LEPVR3.548e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CRUWA3.548e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ARATH3.548e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_PELHO4.633e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_OLIPU6.051e-8389.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ARAHI6.051e-8389.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_AETCO1.032e-8289.87NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_PIPCE2.299e-8287.97NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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