CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CAPBU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Capsella bursa-pastoris GN=ndhJ PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.299e-82
Identity = 140/158 (88.61%), Postives = 147/158 (93.04%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GL+HRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+  EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLIHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNPAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_AETGR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Aethionema grandiflora GN=ndhJ PE=3 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 3.003e-82
Identity = 141/158 (89.24%), Postives = 147/158 (93.04%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSN +IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNSRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_NASOF (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Nasturtium officinale GN=ndhJ PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.922e-82
Identity = 141/158 (89.24%), Postives = 147/158 (93.04%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDW S+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_BARVE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Barbarea verna GN=ndhJ PE=3 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.922e-82
Identity = 141/158 (89.24%), Postives = 147/158 (93.04%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GLVHRSLGFDYQGIETLQIKPEDW S+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESWIGWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLVHRSLGFDYQGIETLQIKPEDWDSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_TRACE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Trachelium caeruleum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.690e-82
Identity = 140/158 (88.61%), Postives = 149/158 (94.30%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LSAWLVKHGL+HRSLGFDYQGIET QIK EDWHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRI+YGVDQPEEVCIKVFA R +P+IPSVF VWKS +FQERESYDMLGI YDNHPRL RILMP+SWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGYLSAWLVKHGLIHRSLGFDYQGIETFQIKSEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIKYGVDQPEEVCIKVFATRRDPRIPSVFCVWKSVDFQERESYDMLGISYDNHPRLKRILMPDSWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_DRANE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Draba nemorosa GN=ndhJ PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.738e-82
Identity = 138/158 (87.34%), Postives = 147/158 (93.04%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQG LS WL K GL+HRSLGFDYQGIETLQIKPEDWH++AVILY+YGYNYLR QCAYDVAPGGLLASVYHLTRIEYGV+Q EEVCIKVF  RSNP+IPSVFWVWKS +FQERESYDMLGI YD+HPRL RILMPESW+GWPLRKDYIAPNFYEIQDAY
Sbjct:    1 MQGTLSVWLAKRGLIHRSLGFDYQGIETLQIKPEDWHAIAVILYVYGYNYLRLQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTQRSNPRIPSVFWVWKSTDFQERESYDMLGITYDSHPRLKRILMPESWMGWPLRKDYIAPNFYEIQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LEMMI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lemna minor GN=ndhJ PE=3 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.947e-81
Identity = 138/158 (87.34%), Postives = 145/158 (91.77%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQ  LSAWLVKH LVHRSLGFDYQGIETLQIKPEDW S+AVI Y+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YGVDQPEEVCIKVF PR NP +PSVFWVW+SA+FQERESYDM GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    1 MQSHLSAWLVKHELVHRSLGFDYQGIETLQIKPEDWDSIAVISYVYGYNYLRSQCAYDVAPGGFLASVYHLTRIQYGVDQPEEVCIKVFVPRENPIVPSVFWVWRSADFQERESYDMFGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_IPOPU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Ipomoea purpurea GN=ndhJ PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.661e-81
Identity = 140/165 (84.85%), Postives = 149/165 (90.30%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVD-------QPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQ  LS WLVKHG++HRSLGFDYQGIETLQIKPEDWHSVAVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGV        QPEEVCIKVFA R N +IPSVFW+WKSA+FQERESYDMLGI YDNHPRL RILMPESWIGWPLRKDY+AP+FYEIQDA+
Sbjct:    1 MQSFLSVWLVKHGIIHRSLGFDYQGIETLQIKPEDWHSVAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVTRIEYGAYQPEEVCIKVFASRKNSRIPSVFWIWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYVAPHFYEIQDAH 165          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LUPLU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lupinus luteus GN=ndhJ PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 2.152e-80
Identity = 139/158 (87.97%), Postives = 146/158 (92.41%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWLVKHGL+HRSLGFDYQGIETLQIKPE WHS+AVILY+YGYNYLRSQCAYDVAPGGLLASVYHLTRIE G+DQPEEVCIKVF       IPS+FWVWKSA+FQERESYDMLGI Y NHPRL RILMPESWIGWPLRKDYIAPNFYEIQDA+
Sbjct:    1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEAWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIECGIDQPEEVCIKVFVQGKILGIPSIFWVWKSADFQERESYDMLGISYYNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_DIOEL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Dioscorea elephantipes GN=ndhJ PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.705e-77
Identity = 133/157 (84.71%), Postives = 142/157 (90.45%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDA 793
            MQ RLS WLVKH LVHRSLGFDYQGIETLQIK EDW S+AVI YIYGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D+ EEVC+KVF  R+NP+IPSVFW+WKSA+FQERESYDMLGI Y NHP L RILMPESWIGWPLRKDYI PNFYEIQDA
Sbjct:    1 MQSRLSDWLVKHELVHRSLGFDYQGIETLQIKTEDWDSIAVISYIYGYNYLRSQCAYDVAPGGFLASVYHLTRIQYGIDKVEEVCLKVFVSRNNPRIPSVFWIWKSADFQERESYDMLGISYANHPHLKRILMPESWIGWPLRKDYITPNFYEIQDA 157          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_CAPBU2.299e-8288.61NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_AETGR3.003e-8289.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_NASOF3.922e-8289.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_BARVE3.922e-8289.24NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_TRACE6.690e-8288.61NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_DRANE8.738e-8287.34NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LEMMI1.947e-8187.34NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_IPOPU9.661e-8184.85NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LUPLU2.152e-8087.97NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_DIOEL1.705e-7784.71NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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