CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SORBI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Sorghum bicolor GN=ndhJ PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.799e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++G+ETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFWVW+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHDVVHRSLGFDHRGVETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SACOF (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Saccharum officinarum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.799e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++G+ETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFWVW+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHDVVHRSLGFDHRGVETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_SACHY (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Saccharum hybrid GN=ndhJ PE=3 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.799e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++G+ETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFWVW+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHDVVHRSLGFDHRGVETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_MAIZE (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Zea mays GN=ndhJ PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.799e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++G+ETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFWVW+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHDVVHRSLGFDHRGVETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWVWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_WHEAT (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Triticum aestivum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ORYSJ (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK EDW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+S++FQERES+DM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ORYSI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oryza sativa subsp. indica GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK EDW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+S++FQERES+DM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ORYSA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oryza sativa GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK EDW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+S++FQERES+DM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ORYNI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Oryza nivara GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 129/157 (82.17%), Postives = 145/157 (92.36%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK EDW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+S++FQERES+DM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
[Close]
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_LOLPR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Lolium perenne GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2 
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_SORBI3.799e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SACOF3.799e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_SACHY3.799e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_MAIZE3.799e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_WHEAT4.962e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ORYSJ4.962e-7782.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ORYSI4.962e-7782.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ORYSA4.962e-7782.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ORYNI4.962e-7782.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_LOLPR4.962e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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