CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_HORVU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Hordeum vulgare GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.962e-77
Identity = 130/157 (82.80%), Postives = 144/157 (91.72%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_BRADI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Brachypodium distachyon GN=ndhJ PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.480e-77
Identity = 129/157 (82.17%), Postives = 144/157 (91.72%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVFA + NP+IPSVFW+W+SA+FQERESYDM+GI YDNHPRL RILMPESW+GWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHKVVHRSLGFDHRGIETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSADFQERESYDMVGISYDNHPRLKRILMPESWVGWPLRKDYITPNFYEIQDAH 159          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_AGRST (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Agrostis stolonifera GN=ndhJ PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.444e-76
Identity = 129/157 (82.17%), Postives = 143/157 (91.08%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QG LS WLVKH +VHRSLGFD++GIETLQIK  DW S+AVILY+YGYNYLRSQCAYDVAPGG LASVYHLTRI+YG+D PEEVCIKVF  + NP+IPSVFW+W+SA+FQERESYDM+GI YDNHPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    3 QGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAGDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFVQKDNPRIPSVFWIWRSADFQERESYDMVGISYDNHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 159          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ANTFO (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Anthoceros formosae GN=ndhJ PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.085e-75
Identity = 124/162 (76.54%), Postives = 142/162 (87.65%), Query Frame = 2
Query:  311 EIKKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +  ++QGRLSAWL+KH L HR LGFDYQG+ETLQ++ EDW S+AV LY YG+NYLRSQC YDVAPGGLLASVYHLT+++   DQPEEVCIK+F  R NPKIPSVFWVWK A+FQERESYDMLGI Y++HPRL RILMP+SWIGWPLRKDYI PNFYE+QDAY
Sbjct:    8 DTNEIQGRLSAWLIKHRLAHRPLGFDYQGVETLQVRSEDWLSIAVALYAYGFNYLRSQCVYDVAPGGLLASVYHLTKVQSNADQPEEVCIKIFVSRKNPKIPSVFWVWKGADFQERESYDMLGISYESHPRLKRILMPDSWIGWPLRKDYIVPNFYELQDAY 169          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CYCTA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cycas taitungensis GN=ndhJ PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.010e-74
Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 2
Query:  290 YRNQNVGEIKKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            Y +    +  ++QGRLSAWL KH L HR LG DYQGIETLQIK ED  SVAV LY+YG+NYLRSQCAYDVAPGG LASVYHLT I+   DQPEE+CIKVF PR NP+IPS+FW+WKSA+FQERESYDMLGIL+++HPRL RILMPESWIGWPLRKDYI PNFYEIQDA+
Sbjct:    5 YTDTPTRKTNEVQGRLSAWLAKHKLAHRPLGSDYQGIETLQIKSEDRASVAVALYVYGFNYLRSQCAYDVAPGGSLASVYHLTNIQDDADQPEEICIKVFVPRKNPRIPSIFWIWKSADFQERESYDMLGILHESHPRLKRILMPESWIGWPLRKDYITPNFYEIQDAH 173          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ANGEV (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Angiopteris evecta GN=ndhJ PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.010e-74
Identity = 122/158 (77.22%), Postives = 140/158 (88.61%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWL KH L HR LGFDYQGIE LQI+P+DW S+AV LY+YG+NYLRSQCAYDV PGG LASVYHLT+++   DQPEEVCIK+F  R +P+IPSVFW+WKS++FQERESYDM GI+Y++HPRL RILMPESWIGWPLRKDYI PNFYE+QDAY
Sbjct:    1 MQGRLSAWLAKHQLAHRPLGFDYQGIEILQIRPQDWPSIAVALYVYGFNYLRSQCAYDVTPGGGLASVYHLTKVQDDADQPEEVCIKIFVSREDPRIPSVFWIWKSSDFQERESYDMFGIIYESHPRLKRILMPESWIGWPLRKDYIVPNFYELQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PHYPA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Physcomitrella patens GN=ndhJ PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.135e-74
Identity = 123/159 (77.36%), Postives = 139/159 (87.42%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            K+QGRLS WL  H L HR LGFDYQG+E LQI+ EDW S+AV LY+YG+NYLRSQCAYDVAPGGLLASVYH T+IE  VDQPEE+CIK+F  R  PKIPSVFW+WKSA+FQERESYDMLGI Y+NHPRL RILMP++WIGWPLRKDYI P+FYE+QDAY
Sbjct:   11 KIQGRLSVWLANHKLPHRPLGFDYQGVEILQIRSEDWLSIAVALYVYGFNYLRSQCAYDVAPGGLLASVYHFTKIEDNVDQPEEICIKIFVSRQKPKIPSVFWIWKSADFQERESYDMLGISYENHPRLKRILMPDTWIGWPLRKDYIVPDFYELQDAY 169          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_MARPO (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Marchantia polymorpha GN=ndhJ PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.706e-74
Identity = 123/159 (77.36%), Postives = 138/159 (86.79%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            K+QGRLS WL+KH L HR LGFDYQGIETLQI+ EDW S+AV LY+YG+NYLRSQCAYDV PGGLLASVYH T+I    DQPEE+CIK+F  R NPKIPS+FWVWKSA+FQERESYDM GI Y+NHP L RILMP+SW+GWPLRKDYI PNFYE+QDAY
Sbjct:   11 KIQGRLSIWLIKHNLKHRPLGFDYQGIETLQIRSEDWPSLAVALYVYGFNYLRSQCAYDVEPGGLLASVYHFTKITDNADQPEEICIKIFILRKNPKIPSIFWVWKSADFQERESYDMFGIFYENHPCLKRILMPDSWLGWPLRKDYIVPNFYELQDAY 169          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CRYJA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Cryptomeria japonica GN=ndhJ PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.157e-72
Identity = 125/158 (79.11%), Postives = 137/158 (86.71%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGRLSAWL KH L HR LGFDYQG ETLQIK EDW S+AV LY+YG+NYLRSQCAYDVAPGG LASVYHLT+I    DQPEEVCIKVF PR +P+IPSV  +WK ANFQERESYDMLGI Y++HP L RILMPESWIGWPLRKDYIAP+FYEIQD++
Sbjct:    1 MQGRLSAWLAKHKLAHRPLGFDYQGTETLQIKAEDWVSIAVALYVYGFNYLRSQCAYDVAPGGSLASVYHLTKINDNADQPEEVCIKVFVPREDPRIPSVLRIWKGANFQERESYDMLGIFYESHPCLKRILMPESWIGWPLRKDYIAPDFYEIQDSH 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ZYGCR (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Zygnema circumcarinatum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.398e-71
Identity = 116/159 (72.96%), Postives = 138/159 (86.79%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            ++QGRLSAWLV H L HR LGFDYQG+ET++++PEDW SVAV LY+YG+NYLR QCAYDVAPGG LASVYHLT++E   DQPEE+C+K+F  R+NP +PS FW+WKSA+FQERE YDM GI+Y NHP L RILMPESW+GWPLRKDYI P+FYE+QDAY
Sbjct:   11 QIQGRLSAWLVTHKLPHRPLGFDYQGVETIEVRPEDWPSVAVALYVYGFNYLRCQCAYDVAPGGALASVYHLTKVEDVADQPEELCVKLFVSRNNPSVPSSFWIWKSADFQERECYDMFGIVYKNHPHLKRILMPESWLGWPLRKDYITPDFYELQDAY 169          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_HORVU4.962e-7782.80NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_BRADI6.480e-7782.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_AGRST1.444e-7682.17NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ANTFO2.085e-7576.54NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CYCTA3.010e-7475.74NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ANGEV3.010e-7477.22NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_PHYPA5.135e-7477.36NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_MARPO6.706e-7477.36NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CRYJA2.157e-7279.11NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ZYGCR1.398e-7172.96NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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