CX069464

Overview
NameCX069464
Unique NameCX069464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CHAGL (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Chaetosphaeridium globosum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.385e-71
Identity = 116/159 (72.96%), Postives = 140/159 (88.05%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            ++QGR+SAWL  + L HR LGFDYQG+ETLQIKPEDW S+AV LY+ G+NYLR QC YDV PGG LASVY+LT+++  VDQPEEVCIK+F PR NPKIPS+FWVWK+A++QERE+YDMLGI+Y++HP L RILMPESW+GWPLRKDYI P+FYE+QDAY
Sbjct:   10 QVQGRISAWLASNNLPHRPLGFDYQGVETLQIKPEDWPSIAVALYVNGFNYLRCQCGYDVYPGGPLASVYYLTKVDDNVDQPEEVCIKIFVPRENPKIPSIFWVWKTADYQERETYDMLGIVYESHPNLKRILMPESWLGWPLRKDYITPDFYELQDAY 168          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_PSINU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Psilotum nudum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 4.068e-71
Identity = 119/158 (75.32%), Postives = 135/158 (85.44%), Query Frame = 2
Query:  323 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            MQGR+S WL +H L HR  GFDYQGIE +QIK EDW S+AV LYIYG+NYLRSQCAYDV PGG LASVYHLT+++   DQPEEVCIK+   R +PKIPS+FWVWKSA+FQERESYDM GI Y++HPRL RILMPESWIGWPLRKDY+ PNFYE+QDAY
Sbjct:    1 MQGRVSVWLSQHKLAHRPSGFDYQGIEIIQIKSEDWPSIAVALYIYGFNYLRSQCAYDVMPGGFLASVYHLTKLQDNADQPEEVCIKILVSRESPKIPSIFWVWKSADFQERESYDMSGIHYESHPRLKRILMPESWIGWPLRKDYVVPNFYELQDAY 158          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_STAPU (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Staurastrum punctulatum GN=ndhJ PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 4.498e-70
Identity = 114/157 (72.61%), Postives = 136/157 (86.62%), Query Frame = 2
Query:  326 QGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            QGRLSAWL  H L HR LGFDYQG+E ++++PEDW SVAV LY+YG+NYLR QC YDV PGG LAS+Y+LT+++ G DQPEEVCIK+F  R NPKIPS FW+WKSA+FQERESYDMLGI+Y++HP L RILMPESW+GWPLRKDYI P+F+E+QDAY
Sbjct:   13 QGRLSAWLTIHRLSHRPLGFDYQGVEIVEVRPEDWPSVAVSLYVYGFNYLRLQCGYDVFPGGPLASIYYLTKVQDGADQPEEVCIKIFVSRDNPKIPSAFWIWKSADFQERESYDMLGIIYESHPHLKRILMPESWLGWPLRKDYITPDFFELQDAY 169          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ADICA (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Adiantum capillus-veneris GN=ndhJ PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.890e-68
Identity = 113/159 (71.07%), Postives = 132/159 (83.02%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            K +GRLSAWL KH   HR LG+DY+G+E L++K E+W S AV LY YG+NYLRSQCAYD  PGG L SVYHLT+++   DQPEE+C+KVF  R+NP+IPSV+WVWKSA FQERESYDMLGI+Y  HP L RILMPESWIGWPLRKDY+ PNFYE+QDAY
Sbjct:   12 KTRGRLSAWLTKHNFSHRPLGYDYRGVEILEVKSEEWLSTAVALYAYGFNYLRSQCAYDATPGGSLVSVYHLTQMQDQSDQPEEICVKVFVSRTNPQIPSVYWVWKSAEFQERESYDMLGIIYQGHPYLRRILMPESWIGWPLRKDYVVPNFYELQDAY 170          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CHLAT (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Chlorokybus atmophyticus GN=ndhJ PE=3 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 2.310e-66
Identity = 108/160 (67.50%), Postives = 136/160 (85.00%), Query Frame = 2
Query:  317 KKMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            K ++G +S WL +  L H+ LGFDYQG+E L++KPED  SVA+ LY YG+NYLR+QCAYDV+PGG LASVYHLT+++  VDQP+EVC+KVF PR NP++PSVFW+WK+A+FQERESYDM GI Y+ HP L RILMPE+W+GWPLRKDYI P+F+E+QDAY
Sbjct:   36 KNIKGVVSNWLAEMKLRHKPLGFDYQGVEILEVKPEDLTSVAIALYAYGFNYLRNQCAYDVSPGGNLASVYHLTKLDADVDQPQEVCLKVFLPRENPRVPSVFWIWKTADFQERESYDMFGIYYEGHPHLKRILMPENWVGWPLRKDYITPDFFELQDAY 195          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_MESVI (NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Mesostigma viride GN=ndhJ PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.146e-65
Identity = 109/159 (68.55%), Postives = 135/159 (84.91%), Query Frame = 2
Query:  320 KMQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            +++G +S WL++  L+HR LGFDYQG+ETL++K ++  SVA+ LY YG+NYLRSQCAYDV+PGG LASVYHLT+++   DQP+EVCIKVF PR+ P IPSVFW+WK+A+FQERESYDM GI Y+ HP L RILMPE WIGWPLRKDYI P+FYE+QDAY
Sbjct:   16 ELKGLVSNWLIEMKLMHRPLGFDYQGVETLEVKAQNLTSVAIALYAYGFNYLRSQCAYDVSPGGDLASVYHLTKVDDNADQPQEVCIKVFVPRTKPIIPSVFWIWKTADFQERESYDMFGIYYEGHPHLKRILMPEHWIGWPLRKDYITPDFYELQDAY 174          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_TRIEI (NAD(P)H-quinone oxidoreductase subunit J OS=Trichodesmium erythraeum (strain IMS101) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.996e-53
Identity = 90/156 (57.69%), Postives = 117/156 (75.00%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G++S WL  +G  H  L  D+QGIE ++   +    +A  LY YG+NYL+ QCAYD  PG  L S+YHL ++   V+QPEE+ +KVF PR +P++PSV+W+WKSA+FQERESYDM GI+Y+ HP L RILMPE W+GWPLRKDYI+P FYE+QDAY
Sbjct:   12 GKVSKWLTDNGFDHEFLAPDHQGIEIIKGNRDFLIPLATALYAYGFNYLQCQCAYDAGPGEDLVSMYHLVKVSDDVEQPEEIRLKVFVPRDDPRLPSVYWIWKSADFQERESYDMYGIIYEGHPNLKRILMPEDWVGWPLRKDYISPEFYELQDAY 167          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ANAVT (NAD(P)H-quinone oxidoreductase subunit J OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhJ PE=3 SV=4)

HSP 1 Score: 203.756 bits (517), Expect = 9.423e-52
Identity = 87/156 (55.77%), Postives = 115/156 (73.72%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G  S WL ++G  H SL  D  G+E ++++P+    +A  LY YG+NYL+ Q   D+ PG  L SVYHL ++    D+PEEV +KVF PR NP +PSV+W+WK+A++QERESYDM GI+Y+ HP L RILMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   20 GPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATALYAYGFNYLQFQGGIDLGPGQDLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_ANASP (NAD(P)H-quinone oxidoreductase subunit J OS=Anabaena sp. (strain PCC 7120) GN=ndhJ PE=3 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.042e-50
Identity = 85/156 (54.49%), Postives = 114/156 (73.08%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G  S WL ++G  H SL  D  G+E ++++ +    +A  LY YG+NYL+ Q   D+ PG  L SVYHL ++    D+PEE+ +KVF PR NP +PSV+W+WK+A++QERESYDM GI+Y+ HP L RILMPE W+GWPLRKDYI+P+FYE+QDAY
Sbjct:   20 GPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATALYAYGFNYLQFQGGVDLGPGQDLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY 175          
BLAST of CX069464 vs. ExPASy Swiss-Prot
Match: NDHJ_CYAA5 (NAD(P)H-quinone oxidoreductase subunit J OS=Cyanothece sp. (strain ATCC 51142) GN=ndhJ PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.959e-50
Identity = 87/156 (55.77%), Postives = 115/156 (73.72%), Query Frame = 2
Query:  329 GRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSVAVILYIYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGVDQPEEVCIKVFAPRSNPKIPSVFWVWKSANFQERESYDMLGILYDNHPRLXRILMPESWIGWPLRKDYIAPNFYEIQDAY 796
            G +S+WL ++G  H  L  D+ G+E +++ P+    +   LY YG+NYL+ Q AYD+ PG  L S YHL ++    +Q EEV IKVF PR NP IPSV+W+WK+A++QERESYDM GI+YD HP L RILMPE W+GWPLRKDY++P+FYE+QDAY
Sbjct:   23 GPVSSWLTENGFDHDLLEPDHLGVELIKVSPDFLVPLCTALYAYGFNYLQCQGAYDLGPGKELVSFYHLIKVSDNCEQAEEVRIKVFLPRDNPHIPSVYWIWKAADWQERESYDMYGIIYDGHPDLKRILMPEDWVGWPLRKDYVSPDFYELQDAY 178          
The following BLAST results are available for this feature:
BLAST of CX069464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
NDHJ_CHAGL2.385e-7172.96NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_PSINU4.068e-7175.32NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_STAPU4.498e-7072.61NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_ADICA1.890e-6871.07NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_CHLAT2.310e-6667.50NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_MESVI1.146e-6568.55NAD(P)H-quinone oxidoreductase subunit J, chloropl... [more]
NDHJ_TRIEI4.996e-5357.69NAD(P)H-quinone oxidoreductase subunit J OS=Tricho... [more]
NDHJ_ANAVT9.423e-5255.77NAD(P)H-quinone oxidoreductase subunit J OS=Anabae... [more]
NDHJ_ANASP1.042e-5054.49NAD(P)H-quinone oxidoreductase subunit J OS=Anabae... [more]
NDHJ_CYAA53.959e-5055.77NAD(P)H-quinone oxidoreductase subunit J OS=Cyanot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10F04-K8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069464 ID=CX069464; Name=CX069464; organism=Citrus sinensis; type=EST; length=800bp
AAATCTATGAAGATCGAATTCGATTGCAACGGGAGAATCGCTCGTTTACT
TTTACTACCAATCACAAGTTTCGTGTTGTATGCAGTACTAATACTGGAAA
TTATGATCAAGGATTACTTTATCAACCACCATCTACGTCAGAAATCCCGC
CTGAAACCTTTTTCAAATACAAAAGTTCAGTATCTTCCCCCGAATTCATT
AATTAGGCAGGAGGATTCATTTGTACAGAATAAGAAAGAGCGAATTAATC
TTCATAAATTCCAAAAATTCATCGTAAATGTGAAATATTTATCGAAATCA
AAATGTGGGAGAGATAAAAAAGATGCAGGGTCGTTTGTCTGCTTGGCTGG
TCAAGCATGGGCTAGTTCATAGATCTTTGGGCTTTGATTACCAAGGAATA
GAAACTTTACAAATAAAGCCCGAGGATTGGCACTCCGTTGCTGTCATTTT
GTATATATATGGCTACAATTATCTACGGTCCCAATGTGCCTATGATGTAG
CACCGGGCGGACTGTTAGCCAGTGTGTATCATCTTACGCGAATAGAGTAT
GGTGTAGATCAACCAGAAGAGGTATGCATAAAAGTATTTGCTCCAAGGAG
TAATCCTAAAATTCCATCGGTTTTCTGGGTTTGGAAAAGTGCGAATTTTC
AAGAACGGGAATCTTATGATATGCTGGGAATCCTTTATGATAATCATCCA
CGACTGANACGTATCTTAATGCCTGAAAGTTGGATAGGGTGGCCCTTACG
TAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAA
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