DR403842

Overview
NameDR403842
Unique NameDR403842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_NYMAL (Photosystem II reaction center protein K OS=Nymphaea alba GN=psbK PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.359e-16
Identity = 43/61 (70.49%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NIFSL+ ICLNSA   S F FAKLPEAYAFLNPIVD MPVIP         WQAAVSFR
Sbjct:    1 MPNIFSLICICLNSALQPSGFFFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_PIPCE (Photosystem II reaction center protein K OS=Piper cenocladum GN=psbK PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 44/61 (72.13%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL  ICL+SA +SSSF FAKLPEAYA  NPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFSL--ICLSSALHSSSFFFAKLPEAYALFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_ARATH (Photosystem II reaction center protein K OS=Arabidopsis thaliana GN=psbK PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.194e-15
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIF+L+ I  NS  +SS+FL AKLPEAYAFLNPIVDVMPVIP         WQAAVSFR
Sbjct:    1 MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_LOTJA (Photosystem II reaction center protein K OS=Lotus japonicus GN=psbK PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.659e-15
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M+NI SL+ I +NS PYSS F   KLPEAYAFLNPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MINIVSLVCIYINSVPYSSIFFLDKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_AMBTC (Photosystem II reaction center protein K OS=Amborella trichopoda GN=psbK PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.473e-15
Identity = 41/61 (67.21%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NIFSL+ ICL+SA +SS F FAKLPEAYA  NPIVDVMPVIP         WQAA SFR
Sbjct:    1 MPNIFSLICICLHSALHSSGFFFAKLPEAYAVFNPIVDVMPVIPLFFFLLAFVWQAAASFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 44/61 (72.13%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            MLNIFSL  I LNSA YSSS  FAKLPEAYAFL+PIVD MPVIP         WQAAVSFR
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_SECCE (Photosystem II reaction center protein K OS=Secale cereale GN=psbK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NI SL  IC NS  Y +SF FAKLPEAYA  NPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_HORVU (Photosystem II reaction center protein K OS=Hordeum vulgare GN=psbK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.724e-14
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NI SL  IC NS  Y +SF FAKLPEAYA  NPIVD+MPVIP         WQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_WHEAT (Photosystem II reaction center protein K OS=Triticum aestivum GN=psbK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 39/61 (63.93%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NI SL  IC NS  Y +SF FAKLPEAYA  NPIVD MPVIP         WQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of DR403842 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSJ (Photosystem II reaction center protein K OS=Oryza sativa subsp. japonica GN=psbK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.016e-14
Identity = 39/61 (63.93%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  202 MLNIFSLMYICLNSAPYSSSFLFAKLPEAYAFLNPIVDVMPVIPXXXXXXXXXWQAAVSFR 384
            M NI SL  IC NS  Y +SF FAKLPEAYA  NPIVD MPVIP         WQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of DR403842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
PSBK_NYMAL5.359e-1670.49Photosystem II reaction center protein K OS=Nympha... [more]
PSBK_PIPCE1.194e-1572.13Photosystem II reaction center protein K OS=Piper ... [more]
PSBK_ARATH1.194e-1568.85Photosystem II reaction center protein K OS=Arabid... [more]
PSBK_LOTJA2.659e-1565.57Photosystem II reaction center protein K OS=Lotus ... [more]
PSBK_AMBTC3.473e-1567.21Photosystem II reaction center protein K OS=Ambore... [more]
PSBK_SILLA1.724e-1472.13Photosystem II reaction center protein K OS=Silene... [more]
PSBK_SECCE1.724e-1463.93Photosystem II reaction center protein K OS=Secale... [more]
PSBK_HORVU1.724e-1463.93Photosystem II reaction center protein K OS=Hordeu... [more]
PSBK_WHEAT5.016e-1463.93Photosystem II reaction center protein K OS=Tritic... [more]
PSBK_ORYSJ5.016e-1463.93Photosystem II reaction center protein K OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403842 ID=DR403842; Name=DR403842; organism=Citrus sinensis; type=EST; length=445bp
GCCGGGGGAAAAAAAAAAAAAAAAAAAGTANNNNTNNNNCAATTCTCACA
CGAGAATAGAAGGATTTTTGTTTTGATTGGGTCGGTTCCAAGAAGTTTTT
TTTTGTCTACCTTACTTTCTTTTCTTCATTTTTATCTTATATCAATAAGA
TATTAATAACTCAATCAAAATAAAATTATCTCCAAGAACAAAATGTTTGT
TATGCTTAATATCTTTAGTTTAATGTATATCTGTCTTAATTCTGCCCCTT
ATTCGAGTAGTTTTTTATTCGCTAAATTACCCGAGGCCTACGCTTTTTTG
AATCCAATTGTAGATGTTATGCCAGTAATACCTGTTCTATTTTTTCTCTT
AGTCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAGATCTTTAATATT
GTGCTAGAAAAATTCATGATTTATTCTAGTTCGAAAAAAAAAAAA
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