CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = -1
Query:  305 YELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVA---PPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 709
            YE P+G     GAER + PE LF PS +    G    G+      S+  CD+DIR  LYG+++++GG+T+     DR+++E+S   P SM++K++A     ER++S WIGGSILASL TFQQMWI+K EY+E G   V RKC
Sbjct:  287 YEFPNGYNCDFGAERLKIPEGLFDPSNVKGLSGNTMLGVSHVVTTSVGMCDIDIRPGLYGSVIVAGGNTLIQSFTDRLNRELSQKTPPSMRLKLIANNTTVERRFSSWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 428          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.390e-28
Identity = 78/205 (38.05%), Postives = 110/205 (53.66%), Query Frame = -1
Query:  302 RLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPE------RKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 898
            R +L G +LT    + L +   S   +     V  +KE+ A  A   E E+   KT +   + + LPDGQVI+IG ER+   E LFQPS++G+E  GI E     I     +  + L  N VL GG+T   G   R  KE + L  S+++  +V PPE        YS W+GG+ILA +   Q   + K++YDE+GPS+VHRKCF
Sbjct:  165 RFELGGTELTKLFAQELGKTNPSMNLSMSD--VEKLKEQYANCA---EDEIAYKKTQNCEIEQHTLPDGQVISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSMTGFESRFQKEAN-LCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.896e-28
Identity = 79/246 (32.11%), Postives = 119/246 (48.37%), Query Frame = -1
Query:  302 HAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKS-YELPDGQVITIGA------------------------------------------ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 910
            HAI R+DL G+  T+ L ++++ R  S     E  +V D KEKL +++LD  ++L  A+  + + KS Y LPDG   T G                                           ERF  PE LFQP+ +GM  AG+ E    +I  C   ++  LY +I+L+GGST+FP + +R+  E+  L P    +K+    +    VW GGS+LAS   F+ M + K+EY+E G +   R+ F
Sbjct:  177 HAIKRIDLGGKAFTNYLKELVSYR--SINVMDETFLVDDAKEKLCFVSLDLLRDLRLARNGNTLIKSTYVLPDGVTHTKGYVKDPQAAKRFLSLSEKESVVVMDKVGERKKADMNKNEIDLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFF 420          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.536e-27
Identity = 70/191 (36.65%), Postives = 102/191 (53.40%), Query Frame = -1
Query:  305 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA---------GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKV---VAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPS---IVHRKC 832
            S+    +R ++ + KE +  +    +   + AK SS   K +E PDG     G ERFR  E+LF PS     SA         G+HE  Y SI+ CD ++R  L  NIV++GG+++ PG+++R+  E+  LA  S +I V           +VW GGSILASL  FQ +W++K EYDE G      V ++C
Sbjct:  243 SYEIFQKRRVIEEWKESVLDVL---DTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGS-RINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVGVDRALFVEKRC 429          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: CT134_HUMAN (Putative uncharacterized actin family protein C20orf134 OS=Homo sapiens GN=C20orf134 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.625e-27
Identity = 67/204 (32.84%), Postives = 117/204 (57.35%), Query Frame = -1
Query:  314 AILRLDLAGRDLTDALMKILTERGYSFTTTA-EREIVRDMKEKLAYIALDYEQEL-ETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAP----SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVH 907
            A  RL++AG  L+  L  +L          A  R+ +  +K++  Y++LD+E +L + A+   A   S+ + +G  + + +ERFRCPE +FQP ++G    G+    + ++ K    +R  L   +VL+GGST+FPG A+R+ KE+ A       ++++  +VA   R  +VW GGS++ASL +FQ+ WI ++ Y E G  +++
Sbjct:   41 ATFRLNVAGSTLSRYLRDLLVAANPDLLQQALPRKAITHLKKRSCYVSLDFEGDLRDPARHHPA---SFSVGNGCCVCLSSERFRCPEPIFQPGLLGQAEQGLPALAFRALQKMPKTLRTRLADTVVLAGGSTLFPGFAERLDKELEAQCRRHGYAALRPHLVAKHGRGMAVWTGGSMVASLHSFQRRWITRAMYQECGSRLLY 241          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.301e-26
Identity = 72/209 (34.45%), Postives = 119/209 (56.94%), Query Frame = -1
Query:  317 AILRLDLAG-------RDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL-ETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAP----SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIV 907
            A  RL++AG       RDL  A    L  +G S      R+ V  +K++  Y++LD++ ++ + A+   A    + L +G  + +G+ERFRCPE +FQPS++G    G+    + ++ K    +R  L   +VL+GGST+FPG  +RM+ E+ A        +++  +VA P R  +VW GGS++ASL++FQ  W+ ++ Y E GP +V
Sbjct:  142 ATFRLNVAGSTLSRYFRDLLVAACPDLQLQGLS------RKTVTQLKKRCCYVSLDFQGDICDPARHQRAC---FCLGNGCYVRLGSERFRCPEPIFQPSLLGHPEPGLPTLAFQALQKIPTTLRTRLANTVVLAGGSTLFPGFVERMNLELEAQCRRHGYPALQPCLVAHPGRDTAVWTGGSMMASLNSFQCRWMTRAMYQEHGPLLV 341          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_USTMA (Actin-related protein 4 OS=Ustilago maydis GN=ARP4 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.301e-26
Identity = 78/220 (35.45%), Postives = 110/220 (50.00%), Query Frame = -1
Query:  305 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMI-----------------------------------------GMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 832
            SF +     +V D KE +A + L+   + + A+  S   + YE PDG     G ER R  EVLF P++                                          G  + G+ +   +SI   DVD R  LYGNIVL GGS++  G++DR+S E+   AP+  KIK+ +P    ER++S W+G SILASL TF Q+WI+K EY+E G +IVH +C
Sbjct:  318 SFRSYHINRVVNDFKESVAQV-LEVPWDDQQAQFRSG--RMYEFPDGYNDAFGVERLRAAEVLFTPALWNGVSSSESFGAVLHASSQPSSEAGAVNGGSVSAAGATSVAGGKAAIGLADMVLSSINAVDVDSRPSLYGNIVLVGGSSLIQGLSDRLSYELGVKAPNQ-KIKIHSPGNTTERRHSSWLGASILASLGTFHQLWISKQEYEEHGAAIVHARC 533          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.897e-26
Identity = 76/205 (37.07%), Postives = 108/205 (52.68%), Query Frame = -1
Query:  302 RLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPE------RKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 898
            R D+ G DLT+   + L +   S     +   V  +KE+ A  A D  Q    A  SS   + + LPDGQVITI  ER+   E LFQP ++G+E  GI      S+     +  + L  N +L GG+    G  DR  +E + L+ S++   +V PPE       +YS W+GG+ILA +   Q   + K +YDE+GPSIVH+KCF
Sbjct:  161 RFDIGGTDLTNLFAEELKKSNSS--VNIDISDVERLKEQYACCAED--QMAFEAIGSSCRPERHTLPDGQVITIEKERYIVGEALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREAN-LSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 360          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.897e-26
Identity = 76/205 (37.07%), Postives = 108/205 (52.68%), Query Frame = -1
Query:  302 RLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPE------RKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 898
            R D+ G DLT+   + L +   S     +   V  +KE+ A  A D  Q    A  SS   + + LPDGQVITI  ER+   E LFQP ++G+E  GI      S+     +  + L  N +L GG+    G  DR  +E + L+ S++   +V PPE       +YS W+GG+ILA +   Q   + K +YDE+GPSIVH+KCF
Sbjct:  161 RFDIGGTDLTNLFAEELKKSNSS--VNIDISDVERLKEQYACCAED--QMAFEAIGSSCRPERHTLPDGQVITIEKERYIVGEALFQPHILGLEDYGIVHQLVTSVSNVTPEYHRQLLENTMLCGGTASMTGFEDRFQREAN-LSASAICPSLVKPPEYMPENLARYSAWLGGAILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 360          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.455e-26
Identity = 72/220 (32.73%), Postives = 113/220 (51.36%), Query Frame = -1
Query:  320 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQ--------VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 904
            I  + +AGRD+T  +  +L ER ++       E+ + +KEK  Y+  D  +E     T S+  K     DG          + +G ERF  PE+ F P     + +  I +T    I +C +D+R+ LY NIVLSGGSTMF   A ++ +++  L+                P  + ++V++   ++Y+VW GGS+LAS S F Q+  +K+EY E GPSI
Sbjct:  198 IKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKTIKEKFCYVCPDVMKEFVKYDTDSS--KWLRTYDGINSITKRPFSVDVGYERFLGPEIFFHPEFCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDARLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHSKAEYMEKGPSI 415          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ACL6A_HUMAN1.754e-3146.48Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ARP7_ARATH1.390e-2838.05Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]
ARP6_ARATH6.896e-2832.11Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP42_SCHPO1.536e-2736.65SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
CT134_HUMAN7.625e-2732.84Putative uncharacterized actin family protein C20o... [more]
CT134_MOUSE1.301e-2634.45Putative uncharacterized actin family protein C20o... [more]
ARP4_USTMA1.301e-2635.45Actin-related protein 4 OS=Ustilago maydis GN=ARP4... [more]
ARP7_ORYSJ2.897e-2637.07Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI2.897e-2637.07Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]
ARP3_CAEBR6.455e-2632.73Actin-related protein 3 OS=Caenorhabditis briggsae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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