CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.052e-20
Identity = 64/198 (32.32%), Postives = 102/198 (51.52%), Query Frame = -1
Query:  305 SFTTTAEREIVRDMKEKLAYI-----ALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAG--------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 832
            SF    E  ++ + KE +  +             E  KT     + +E+PDG       +RFR  E ++       E+AG              I E    ++   DVD+R +L  N+V++G +++  G  DR++ E+ A+ P  +KIK+ A     ER++  WIGGSILASL TF QMWI++ EY+E+GP++V ++C
Sbjct:  282 SFRAYEEERVLTEFKESVVEVWRGPGRYSVPGNEEFVKTQPG--RVFEMPDGYNQMWREQRFRVTEGMWD------ENAGYPIPEADRLNKTQTIPELIRAALNAVDVDLRGNLLANVVVTGSTSLINGFNDRLNTELMAMYPG-LKIKIHAAGLTSERRFGAWIGGSILASLGTFHQMWISRKEYEENGPNVVEKRC 470          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_NEUCR (Actin-related protein 4 OS=Neurospora crassa GN=arp-4 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = -1
Query:  305 SFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVE----KSYELPDGQVITIGAERFRCPEVLFQPSMI----GMESAGIHETTYNSIMKC-----DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKC 832
            SF    E  ++ + KE +  +     Q   T     AV     + +E+PDG       +RF+  E ++  +        E       T  +++K      DVD+R ++ GN+V++G +++  G  DR++ E++ + P  +KIK+ A     ER++  WIGGSILASL TF QMWI++ EYDE+G  IV ++C
Sbjct:  279 SFRAYEEERVLTEFKESVVEVWRG-PQRFTTPGNEDAVRTQPGRVFEMPDGSNQMWREQRFKVSEGMWDETAAYNSTDEEGRVTKAQTIPALIKAALEGVDVDLRPNILGNVVVTGSTSLLNGFNDRLNHELAQMYPG-VKIKIHAAGLTTERRFGAWIGGSILASLGTFHQMWISRKEYDENGAGIVEKRC 468          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.627e-19
Identity = 60/219 (27.40%), Postives = 107/219 (48.86%), Query Frame = -1
Query:  311 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET--AKTSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCD-VDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMK---------------IKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHR 907
            +I  + +AGRD+T  +  +L +RG      +  +  +++KE+  Y+  D  +E        S  ++ +   P G+ +T+  G ERF  PE+ F P +   +         + +++   +D+R+ LY NIVLSGGST++     R+ ++I  L  + +K               ++V+    +++  W GGS+L     F+     K+EY E GPSIV R
Sbjct:  214 SIKSIPIAGRDITYFVQSLLRDRG---EPDSSLKTAQEIKEEYCYVCPDIVKEFAKYDRDRSRFLKHTITQPGGRQVTVDVGYERFMAPEIFFNPEIYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQLVDTRIKASEVRSGGAKSGGLDVQVITHKRQRHGPWFGGSLLGQTPEFRSYCHTKAEYQEYGPSIVRR 429          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_EMENI (Actin-like protein arp6 OS=Emericella nidulans GN=arp6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 66/244 (27.05%), Postives = 111/244 (45.49%), Query Frame = -1
Query:  308 ILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETA----------KTSSAVEKSYELPDGQ----------------------------------VITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWIAKSEYDESGPSIVHRK 904
            I RLDL G+ LT+ L ++++ R Y+     E  I+ ++KE + +++ D+ ++LE              +  V   Y LPD                                    V+ +G ERF  PE+LF PS IGM+SAGI +    S+      +      N+++ GG+++ PG  +R+  E+  +A +   ++V  P +     W+GGS LA +    +++ I + EY E G S   RK
Sbjct:  233 IRRLDLGGKHLTNYLKELVSMRQYNMVD--ETYIMNEVKESVCFVSNDFNRDLERTWKGNRKRGQPDPTDGVVVDYVLPDPNGGKRGFMRPHDPLLGSKKRKAVLAGASAEQLNEDVLVLGNERFTVPEILFTPSDIGMKSAGIPDIILQSLSVLPTGLHPAFLANVLVVGGNSLLPGFMERLETELRQIASAECVVRVRRPKDPIRFAWLGGSRLATNKEELKKVAITRQEYQEHGSSWTTRK 474          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 64/221 (28.96%), Postives = 102/221 (46.15%), Query Frame = -1
Query:  320 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDG--------QVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 907
            +I  + + G+D+T  + ++L ERG         ++ R +KE   Y   D  +E    K      K  +   G            IG ERF  PE+ F P +   + +  +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +    K+EY+E G SI
Sbjct:  199 SIRSIPITGKDVTQFIQQLLKERGEHIPPEESFDVARRVKEMYCYTCSDIVKEFN--KHDREPNKYIKHWSGIKPKTGAKYTCDIGYERFLGPEIFFHPEIYNNDFTTPLHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.431e-19
Identity = 64/221 (28.96%), Postives = 102/221 (46.15%), Query Frame = -1
Query:  320 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDG--------QVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSM----------------KIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 907
            +I  + + G+D+T  + ++L ERG         ++ R +KE   Y   D  +E    K      K  +   G            IG ERF  PE+ F P +   + +  +H      I    +D R+ LY NIVLSGGSTMF     R+ +++  +  + +                ++ VV+ P ++Y+VW GGS+LAS + F +    K+EY+E G SI
Sbjct:  199 SIRSIPITGKDVTQFIQQLLKERGEHIPPEESFDVARRVKEMYCYTCSDIVKEFN--KHDREPNKYIKHWSGIKPKTGAKYTCDIGYERFLGPEIFFHPEIYNNDFTTPLHVVIDKCIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASNARLGGDAKAQPIEVNVVSHPIQRYAVWFGGSVLASTAEFYEACHTKAEYEEYGASI 417          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_DICDI (Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.852e-19
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = -1
Query:  302 TAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 742
            T  T++  E+  E    QV+++  ERF  PE+LF PS IGM  AG+ E+   SI   + ++   LY NI+L GGST+FPG+ +R+  E+  LAP    I +  P +   S   GG  LA    + +  I+K +Y+E G +  ++K F
Sbjct:  348 TTTTNTTKEEDME----QVLSLVNERFTVPELLFNPSDIGMNQAGLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLELELRKLAPEQYNINIFQPQDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKFF 490          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.982e-19
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = -1
Query:  329 QPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 640
            +P     E  G+ +  Y+SIM  DVD+R  L  N+VL+GG++  PG++DR+  E++ + P S+K +++      ER+Y  W+GGSIL SL TF Q+W+ K EY+E G
Sbjct:  374 KPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVG 479          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP8_ARATH (Actin-related protein 8 OS=Arabidopsis thaliana GN=ARP8 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.224e-18
Identity = 58/177 (32.77%), Postives = 92/177 (51.98%), Query Frame = -1
Query:  359 LTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCD---VDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMK--IKVVAPPERKYSVWIGGSILASLSTFQQMW 874
            LT  L + + E   SF +      VR +KEKL Y+ALDY+ EL     S   + S E+      T+  ERF+  E+LFQP + GM +  +H+     +  CD   +      +  +VL+GGS   PG+++R+ +E+    PSS+   I+V+ PP    + W G  ++++LS F   W
Sbjct:  288 LTGFLKEKMQENNISFQSLYT---VRTLKEKLCYVALDYKAEL-----SKDTQASVEVSGEGWFTLSKERFQTGEILFQPRLAGMRAMSLHQAVSLCMDHCDAAGLTGDDSWFKTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPW 456          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_CAEEL (Actin-like protein C08B11.6 OS=Caenorhabditis elegans GN=C08B11.6 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.904e-18
Identity = 61/221 (27.60%), Postives = 111/221 (50.23%), Query Frame = -1
Query:  320 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKT---SSAVEKSYELPD------GQV-------------ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKV---VAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSI 907
            +++R+D+ G+ LT+ L   ++ R      + E  ++ + KE L +++ ++++ ++ A+     +   K Y +PD      G V             I +G ERF  PE+LF PS I ++  G+ E    SI +C   +R  L  NI++ GGS+ FPG  +R+ +E+ ++ P+   + V   V  P+     W  G  L  L+  +  WI + ++DE G S+
Sbjct:  169 SVIRIDVGGKALTNKLKDWVSYR--QLNVSEETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPDFHSTFRGVVKDVKEPHDPQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINRKDWDERGDSL 383          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP4_GIBZE4.052e-2032.32Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]
ARP4_NEUCR5.293e-2032.29Actin-related protein 4 OS=Neurospora crassa GN=ar... [more]
ARP3_NEUCR2.627e-1927.40Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]
ARP6_EMENI3.431e-1927.05Actin-like protein arp6 OS=Emericella nidulans GN=... [more]
ARP3_ORYSJ3.431e-1928.96Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI3.431e-1928.96Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP6_DICDI5.852e-1936.73Actin-related protein 6 OS=Dictyostelium discoideu... [more]
ARP4_YEAST9.982e-1942.06Actin-related protein 4 OS=Saccharomyces cerevisia... [more]
ARP8_ARATH2.224e-1832.77Actin-related protein 8 OS=Arabidopsis thaliana GN... [more]
ARP6_CAEEL2.904e-1827.60Actin-like protein C08B11.6 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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