CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_KLULA (Actin-like protein ARP6 OS=Kluyveromyces lactis GN=ARP6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.016e-11
Identity = 59/215 (27.44%), Postives = 90/215 (41.86%), Query Frame = -1
Query:  329 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGA--------------------ERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSV--WIGGSILASLSTFQQMWIAKSEYDESG 907
            AI +LD+ GR LT  L + ++ R Y+     E  +V ++KE+  ++  +        K ++ VE  Y LPD Q   +G                     E F  PE  F P +  +   GI ET    I  C   +R  L  NIV +GG+   P   +R+  E+    P     KV +P E+  S+  W      A+   F+   + + EY E G
Sbjct:  190 AIKKLDIGGRFLTGLLQETISFRHYN--VMEETILVNNIKEQCTFVPPESYFSSFHNKMNTKVE--YVLPDFQTSFLGYVKKPGKEKLTDDAQTLLLTDEVFSVPETFFHPEIAQILKPGIVETILECINMCPEVVRPLLVANIVCTGGNFNIPNFHERLQTELQRQCPIDWSCKVHSPQEKDKSLHGWESMKDFANSDQFRSARVTREEYLEHG 400          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP5_YEAST (Actin-related protein 5 OS=Saccharomyces cerevisiae GN=ARP5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.016e-11
Identity = 51/203 (25.12%), Postives = 92/203 (45.32%), Query Frame = -1
Query:  317 LDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMK---------CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILA-SLSTFQQMWIAKSEYDESGPSIV 895
            L+   +D+ + L ++L E   +FT     E   D +  + ++ L                 S  + +   + +  ER R PEV+FQP+M G + AGI E +   ++K             I  D+  N++++GG+   PG+ +R+ KE +   P+   I V    +     W G + LA +   +++  I+K EY+E GP  +
Sbjct:  553 LEYEYKDIVE-LERLLLEHDPNFTEEDTLEAQYDWRNSILHLFL----------RGPRPHDSENIHEQHQMHLNVERIRVPEVIFQPTMGGQDQAGICELSETILLKKFGSQPGKLSQTSI--DMVNNVLITGGNAKVPGLKERIVKEFTGFLPTGTNITVNMSSDPSLDAWKGMAALARNEEQYRKTVISKKEYEEYGPEYI 742          
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ARP6_CANGA (Actin-like protein ARP6 OS=Candida glabrata GN=ARP6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 53/213 (24.88%), Postives = 89/213 (41.78%), Query Frame = -1
Query:  329 AILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKV-VAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESG 907
            A+ +LD+ GR L   L + ++ R Y+     E  +V ++KE+  Y+  D     E  K     +  + LPD                    Q++T+  ERF  PE  F P +      GI ET   SI      +R  +  NIV  GG+   PG  DR+  E+    P+    +  ++  ++  + W   +  A    +++  + K +Y E G
Sbjct:  198 AVKKLDVGGRFLNGLLKETISFRHYNVMD--ESILVNNIKEQCLYV--DPVSYFEAFKAKGKNKIDFVLPDFQTSFQGYVRDPKTALPDNAQILTLTDERFSVPEAFFHPEISQSLKPGIIETVLESIYMLPELLRPLMASNIVCMGGNFNLPGFTDRLVSELQRQLPTDWVCRAKISSGDKSLTGWTAMAKFAHTDAYKKARVTKEDYFEHG 406          
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ARP6_KLULA2.016e-1127.44Actin-like protein ARP6 OS=Kluyveromyces lactis GN... [more]
ARP5_YEAST2.016e-1125.12Actin-related protein 5 OS=Saccharomyces cerevisia... [more]
ARP6_CANGA5.865e-1124.88Actin-like protein ARP6 OS=Candida glabrata GN=ARP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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