CX069436 | Citrus Genome Database

Overview


Name	CX069436
Unique Name	CX069436
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	913

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 6.109e-101
Identity = 177/204 (86.76%), Postives = 193/204 (94.61%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYS TT+AEREIVRD+KEKLAY+ALDYEQELETAK+SS+VEKSYE+PDGQVITIG+ERFRCPEVLFQPS++GMES  +HE TYNSIMKCDVDIRKDLYGN+VLSGG TMFPGIADRMSKEI++L PSSMK+KVVAPP RKYSVWIGGSILASLSTFQQMWI+K EYDE+GP IVH KCF
Sbjct:  172 PHAILRLDLAGRDLTDHLMKILTERGYSLTTSAEREIVRDIKEKLAYVALDYEQELETAKSSSSVEKSYEMPDGQVITIGSERFRCPEVLFQPSLVGMESPSVHEATYNSIMKCDVDIRKDLYGNVVLSGGFTMFPGIADRMSKEITSLVPSSMKVKVVAPPRRKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 367.081 bits (941), Expect = 7.978e-101
Identity = 177/204 (86.76%), Postives = 193/204 (94.61%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES+GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATASSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.042e-100
Identity = 178/204 (87.25%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD +MKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SSA+EKSYELPDGQVITIG ERFRCPE LFQPS +GME++GIHETTYNSIMKCDVDIRKDLY N VLSGGSTM+PGIADRM KEISALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT_PLAMG (Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.361e-100
Identity = 178/204 (87.25%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+E E+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMESAGIHETTYNSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.361e-100
Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMSTAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB_XENTR (Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.361e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB_XENLA (Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.361e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES G+HETTYNSIMKCD+DIRKDLY N VLSGG+TMFPGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB_ORYLA (Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE=2 SV=2)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

[Close]

BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB_OREMO (Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN=actb PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1

Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

The following BLAST results are available for this feature:

BLAST of CX069436 vs. ExPASy Swiss-Prot

BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483


Match Name	E-value	Identity	Description
ACT1_MAIZE	6.109e-101	86.76	Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1	[more]
ACTB3_TAKRU	7.978e-101	86.76	Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc...	[more]
ACT1_SCHMA	1.042e-100	87.25	Actin-1 OS=Schistosoma mansoni PE=2 SV=1	[more]
ACT_PLAMG	1.361e-100	87.25	Actin, adductor muscle OS=Placopecten magellanicus...	[more]
ACTC_BRAFL	1.361e-100	86.27	Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ...	[more]
ACTB_XENTR	1.361e-100	86.76	Actin, cytoplasmic 1 OS=Xenopus tropicalis GN=actb...	[more]
ACTB_XENLA	1.361e-100	86.76	Actin, cytoplasmic 1 OS=Xenopus laevis GN=actb PE=...	[more]
ACTC_BRABE	1.777e-100	86.27	Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ...	[more]
ACTB_ORYLA	1.777e-100	86.76	Actin, cytoplasmic 1 OS=Oryzias latipes GN=actb PE...	[more]
ACTB_OREMO	1.777e-100	86.76	Actin, cytoplasmic 1 OS=Oreochromis mossambicus GN...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG