CX069436

Overview
NameCX069436
Unique NameCX069436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTB1_TAKRU (Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  172 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACTA_STRPU (Actin, cytoskeletal 1A OS=Strongylocentrotus purpuratus GN=CYIA PE=3 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE++TA +SS++EKSYELPDGQVITIG ERFRCPE LFQP+ +GMESAGIHET YNSIMKCDVDIRKDLY N VLSGGSTMFPGIADRM KEI+ALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.777e-100
Identity = 177/204 (86.76%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GMESAG+HETT+NSIMKCDVDIRKDLY N VLSGG+TMFPGIADRM KEI+ALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGP IVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT4_CAEEL (Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 2.321e-100
Identity = 175/204 (85.78%), Postives = 193/204 (94.61%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVIT+G ERFRCPE LFQPS +GMESAGIHET+YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT2_CAEEL (Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV=3)

HSP 1 Score: 365.54 bits (937), Expect = 2.321e-100
Identity = 175/204 (85.78%), Postives = 193/204 (94.61%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVIT+G ERFRCPE LFQPS +GMESAGIHET+YNSIMKCD+DIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT1_SOYBN (Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2)

HSP 1 Score: 365.54 bits (937), Expect = 2.321e-100
Identity = 181/204 (88.73%), Postives = 195/204 (95.59%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILT+RGYSFTT+A+R IVRDMKEKLAYIALD EQELET++TSS+VEKSYELPDGQVITIGAERF CP VL+QPSM+GME++GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFP IADRMSKEISALAPSSMKIKVVAP ERK+ VWIGGSILASLSTFQQMWI K+EYDESGPSIVH+KCF
Sbjct:  174 PHAILRLDLAGRDLTDFLMKILTQRGYSFTTSAQRGIVRDMKEKLAYIALDCEQELETSETSSSVEKSYELPDGQVITIGAERFGCPGVLYQPSMVGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPSIADRMSKEISALAPSSMKIKVVAPSERKFGVWIGGSILASLSTFQQMWIXKAEYDESGPSIVHKKCF 377
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 2.321e-100
Identity = 174/204 (85.29%), Postives = 194/204 (95.10%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVIT+G ERFRCPE LFQPS +GMESAGIHE+TYNSIMKCD+DIRKDLY NIVLSGG+TM+PGIADRM KE++ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQ+WI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHESTYNSIMKCDIDIRKDLYANIVLSGGTTMYPGIADRMQKEVTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQVWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 3.032e-100
Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 3.032e-100
Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +SS++EKSYELPDGQVITIG ERFRCPE LFQPS +GME+ GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of CX069436 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 365.155 bits (936), Expect = 3.032e-100
Identity = 176/204 (86.27%), Postives = 192/204 (94.12%), Query Frame = -1 
Query:  302 PHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 913
            PHAILRLDLAGRDLTD LMKILTERGYSFTTTAEREIVRD+KEKL Y+ALD+EQE+ TA +S+++EKSYELPDGQVITIG ERFRCPE LFQPS +GMES GIHETTYNSIMKCDVDIRKDLY N VLSGG+TM+PGIADRM KEI+ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  173 PHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of CX069436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
ACTB1_TAKRU1.777e-10086.76Actin, cytoplasmic 1 OS=Takifugu rubripes GN=actba... [more]
ACTA_STRPU1.777e-10086.76Actin, cytoskeletal 1A OS=Strongylocentrotus purpu... [more]
ACT2_SCHMA1.777e-10086.76Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT4_CAEEL2.321e-10085.78Actin-4 OS=Caenorhabditis elegans GN=act-4 PE=2 SV... [more]
ACT2_CAEEL2.321e-10085.78Actin-2 OS=Caenorhabditis elegans GN=act-2 PE=2 SV... [more]
ACT1_SOYBN2.321e-10088.73Actin-1 OS=Glycine max GN=SAC1 PE=3 SV=2[more]
ACT1_ONCVO2.321e-10085.29Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACT5C_ANOGA3.032e-10086.27Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1[more]
ACT4_BOMMO3.032e-10086.27Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT4_ARTSX3.032e-10086.27Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D10-G20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069436 ID=CX069436; Name=CX069436; organism=Citrus sinensis; type=EST; length=913bp
GGCGAATTGGGGTGACCGGGCCCCCCCNTTTTGGAATAAAAAGACAGAAT
TAACATTTCCCACAATATTGGGAGGGGTAACAATTTATCACTACTGAGAA
AAAGGGATAAAAATTTGGAAATAGTACAGCAACGATTATGTTCTTTCCAG
GTTGTTGTCCACACGTTGAAATGAAGAATGCCAAGAAAGGCAATAAAATG
AATGAAAATGCAAGCAGCATTTTGGTTTTAAAATAGAAAATGCAAGCAGC
ATTTTGGTTTTAAAATAGCACCATGCTCCAGTCCATATTTGCTCCTGATC
AGAAGCATTTCCTGTGCACTATTGAAGGGCCAGACTCATCATACTCAGAT
TTGGCAATCCACATTTGCTGGAAAGTGCTGAGGGATGCCAAAATGGATCC
TCCTATCCAGACACTATATTTCCTCTCGGGAGGAGCAACCACCTTAATCT
TCATGCTGCTTGGTGCTAATGCACTGATTTCTTTGCTCATTCTATCAGCA
ATACCAGGGAACATGGTGGAACCGCCACTAAGTACAATGTTCCCATACAG
ATCCTTCCTAATATCAACATCACATTTCATTATGGAGTTGTAAGTTGTTT
CATGAATACCAGCAGACTCCATACCGATCATTGATGGTTGGAAAAGGACT
TCTGGGCATCTAAAACGCTCAGCACCAATGGTGATCACCTGACCATCTGG
TAACTCATAGCTCTTTTCAACAGCAGAGCTGGTCTTGGCGGTTTCTAATT
CTTGTTCATAATCAAGGGCAATGTATGCCAATTTCTCCTTCATATCCCTC
ACAATTTCACGTTCGGCTGTGGTGGTAAATGAGTAGCCACGCTCAGTCAA
GATTTTCATCAAGGCATCAGTGAGATCACGACCGGCAAGGTCAAGACGCA
AGATTGCATGTGG
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