DR403840

Overview
NameDR403840
Unique NameDR403840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD31_ORYSJ (Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  441 LSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            L   RS+A+DW+ KV+  Y F  LTA+L+VNYLDRFL  F L +++  M QL AVA LSLAAK+EET VP  LDLQV D K+VFE +TI+RME+ VL+
Sbjct:   86 LVAVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQLLAVASLSLAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLN 183          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.694e-23
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 3
Query:  441 LSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            L+  R +A++W+ K    + F  L   LA+NYLDRFL    L   K W+ QL AVACLSLAAK+EET+VP+L+DLQV D +FVFEAK++QRME+LVL+
Sbjct:   74 LNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLN 171          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  456 SEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVL 731
            SE+V W+LKV + + F   TA LAV+Y+DRF+ S  L  D  W +QL  VACLSLAAK+EE+  P LLDLQ+E T+F+FE +TIQRME++VL
Sbjct:  126 SESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLP-DHGWASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVL 216          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD32_ORYSJ (Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYCD3-2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.576e-21
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  450 ARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQR-DKPWMAQLAAVACLSLAAKVEETQVPLLLDLQV-------EDTKFVFEAKTIQRMEILVLS 734
            AR  AV W L+  A   F+ALTA LAV YLDR      L+  D+PWMA+LAAVAC++LAAKVEET+VP+LLDLQ+        +  +VFE KT++RME+LVLS
Sbjct:   77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAAKVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLS 179          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD12_ORYSJ (Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 61/139 (43.88%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  345 EQDLSWQDDELSTLLSKEV----------PNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVL 731
            E++  W  D ++ L+  E           P RL +     P+   AR+++V W+LKV   Y    +TA LAV+Y+DRFL   +L  +  W  QL AV CLSLAAK+EET VP +LDLQ+ED +++FE +TI RME+LVL
Sbjct:   73 EEEEVWTVDVVAELIGGEAERSHSPRADYPGRLRS---GRPADLAARADSVAWILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPGNG-WAMQLLAVTCLSLAAKMEETLVPSILDLQMEDARYIFEHRTIFRMELLVL 207          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD42_ARATH (Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 52/94 (55.32%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  453 RSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLS 734
            R +A+ W+ K      F  L   LA+NYLDRFL    L   K W  QL AVACLSLAAK+EET VP L+ LQV    FVFEAK++QRME+LVL+
Sbjct:   69 RIQALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFEAKSVQRMELLVLN 162          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD53_ORYSJ (Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 3
Query:  441 LSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            +  AR+  V W++K NA + F+  TA +AV YLDRFL    + RDK W  QL +VACLSLAAKVEE + P L + +++    +++  ++ RME+LVL+T
Sbjct:   96 MKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLD----MYDCASLMRMELLVLTT 190          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  366 DDELSTLLSKEVPNRLYNILKTNPSLSRARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFS--FQLQRDKPWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            +D ++ L+ KE  N  +  L +  + S  R  A+DW+L     + F   TA +A++Y D FL      LQ+D+ W  +L +VACLSLAAK+EE  VP L     +D  FVF+   I++ E+L+LST
Sbjct:   45 EDYVADLVLKE--NLRFETLPSKTTSSSDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYP-QDHDFVFKPDVIRKTELLILST 167          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.977e-13
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 3
Query:  447 RARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRDK-PWMAQLAAVACLSLAAKVEETQVPLLLDLQVEDTKFVFEAKTIQRMEILVLST 737
            +AR  AV W+L+   ++ F   TA LA+ Y DRF    ++ R+  PW A+L ++AC+S+AAK+EE Q P L +      + VF + +I+RME+LVLST
Sbjct:   98 QARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGR-VFCSDSIRRMELLVLST 194          
BLAST of DR403840 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  450 ARSEAVDWMLKVNAHYSFTALTALLAVNYLDRFLFSFQLQRD-KPWMAQLAAVACLSLAAKVEETQVPLLLDLQ--VEDTKFVFEAKTIQRMEILVLST 737
            AR   V W+L+    + F   TA LA+ Y DRF     + R   PW A+L AVAC+SLAAK+EE + P L + +  V D  + F    I+RME+LVLST
Sbjct:  108 ARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLST 206          
The following BLAST results are available for this feature:
BLAST of DR403840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CCD31_ORYSJ2.752e-2359.18Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ARATH4.694e-2356.12Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=... [more]
CCD11_ORYSJ5.190e-2257.61Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD32_ORYSJ2.576e-2156.31Cyclin-D3-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD12_ORYSJ7.494e-2143.88Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD42_ARATH6.344e-2055.32Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=... [more]
CCD53_ORYSJ1.910e-1645.45Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ARATH1.048e-1438.89Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=... [more]
CCD52_ORYSJ1.977e-1342.86Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ORYSJ4.404e-1344.44Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403840 ID=DR403840; Name=DR403840; organism=Citrus sinensis; type=EST; length=738bp
GGGGGAGTCCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAG
GAAGGTGAGATGCATCAACTCCAAACACTCTCTCTTGTTGTATGATGAAA
CAAGATCTAAACCTCTTCTTCTCAGAAGAAGATGGCTGCTCACCAACAAC
AACCACATAACTCTACATTCCTTCTGGATGCTCTCTATTGCTCTGAAGAG
AATTGGGAGGACGAACTGAGAGTTGATTGCTTTCAAGTTCAAGATGGAGG
ACTAATAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAAGTTTCTATTTTA
TTAATAAAACTAAAACAATCCCAGTTCCCGTTCCAATGCTGCATGAACAA
GACTTGTCTTGGCAGGATGATGAACTTTCCACCTTACTATCCAAAGAAGT
ACCAAACCGGTTGTATAATATCCTGAAGACCAATCCATCTCTGTCTAGGG
CTCGCAGTGAGGCCGTGGATTGGATGCTGAAGGTCAATGCTCACTACTCA
TTCACTGCTCTCACCGCACTTCTTGCTGTCAACTATCTTGATAGGTTCCT
CTTCAGCTTCCAGTTGCAGAGAGATAAGCCGTGGATGGCCCAACTAGCTG
CCGTGGCTTGTCTCTCGCTTGCTGCCAAAGTGGAGGAGACACAAGTGCCC
CTCTTATTAGACCTGCAAGTGGAGGATACCAAATTTGTATTTGAGGCCAA
AACTATCCAGAGGATGGAGATTTTGGTGCTCTCCACGC
back to top