DR403839

Overview
NameDR403839
Unique NameDR403839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403839 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 34/129 (26.36%), Postives = 77/129 (59.69%), Query Frame = 3
Query:  162 AVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 548
            +++D+   K+ EL      + I+ K  +  K+V+ E      +++ED+    P ++CRY VYD+ ++  +  +K++IFFI+W P   ++++K+++ +++    ++L GI   ++ATD +E+   + ++R
Sbjct:    6 SINDEVITKYNELILGHISKGIIIKFSDDFKEVVFEDSFNG-ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEISQSLVEER 133          
BLAST of DR403839 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  150 ASGMAVHDDCKLKFLELK---------AKRTYRFIVFKIEEKQKQVIVEKLGEPTQ---------TYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQ 503
            ASG+ V DD    F ++K         AK+  + ++F + + +K +I+E   E  Q          Y+ F   LP  +CRYA+YD  + T E  +K  + F+ W+P+ A ++SKMIYASSKD  ++   GI+ E Q
Sbjct:    2 ASGVMVSDDVVKVFNDMKVRHQLSPEEAKKRKKAVIFCLSDDKKTIILEPGKEILQGDVGCNVEDPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQ 136          
BLAST of DR403839 vs. ExPASy Swiss-Prot
Match: COF3_DICDI (Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  165 VHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 548
            +  +C+  F ++K +  Y+ I+ K+ E +  ++V+K       + + A SLP ++CR  +Y Y     ++ + S++FFI W PD+A  + K+IY ++K      L GI  ++ A++  E+   VF DR
Sbjct:   11 ISPECQTHFQDIKFRNKYQGILLKVNE-ESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRY-----KSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDR 132          
BLAST of DR403839 vs. ExPASy Swiss-Prot
Match: ADF2_CAEEL (Actin-depolymerizing factor 2, isoform c OS=Caenorhabditis elegans GN=unc-60 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  150 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASL-----PAEECRYAVYDYDFVTAENCQK-----SRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQ--VELQATDPSEM 524
            ASG+ V   CK  +  L  K  + +I+FKI++    ++VEK+GE    Y +F   +       +ECRYA  D +        +     +++ F+ + PD A VR +M+YASS    K  L G++   ++QA++ S++
Sbjct:    2 ASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKLVEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 137          
BLAST of DR403839 vs. ExPASy Swiss-Prot
Match: COF2_DICDI (Cofilin-2 OS=Dictyostelium discoideum GN=cofC-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 33/126 (26.19%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  174 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 551
            +C+  + +++ K  Y+ +V+KI ++  Q+I++K       + +        EC   V+ Y    ++    S++FFI W  +TA    K++Y+++K      L GI +++  T  SE+  ++FK+RA
Sbjct:   17 ECQQYYQDVRIKNKYQGVVYKINKESNQMIIDKTFPNDCNFNELTQCFKENECCIIVFKYVISNSQ----SKLFFIYWGSETAPQTDKVLYSNAKLTLAITLKGIDIKIAGTKKSELTEEIFKERA 138          
The following BLAST results are available for this feature:
BLAST of DR403839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
COF4_DICDI8.298e-1426.36Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
COF1B_XENLA1.084e-1334.56Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF3_DICDI2.044e-1229.69Cofilin-3 OS=Dictyostelium discoideum GN=cofD-1 PE... [more]
ADF2_CAEEL1.014e-1130.66Actin-depolymerizing factor 2, isoform c OS=Caenor... [more]
COF2_DICDI8.587e-1126.19Cofilin-2 OS=Dictyostelium discoideum GN=cofC-1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAH-PNP1246H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403839 ID=DR403839; Name=DR403839; organism=Citrus sinensis; type=EST; length=707bp
GGCCGGGGGAATAAAACCAATATAATANNNNTAGAAGAGAGTCCATTATC
TTAACCTCCATTTCCTCTCCAACAAACTTTCCTTCACCTTGCAAAATTTC
TCTGTACTTTGCTTCTTAGATCTTGATCCTAGAAACCATGGCTAATGCTG
CTTCTGGGATGGCTGTACATGATGACTGTAAGCTAAAGTTCTTGGAGTTG
AAAGCCAAGAGAACCTACCGCTTCATAGTATTTAAGATTGAGGAGAAGCA
GAAGCAGGTCATTGTGGAAAAACTTGGTGAGCCAACTCAAACCTATGAAG
ATTTTGCTGCCAGCCTTCCTGCTGAGGAGTGCCGATATGCTGTGTATGAT
TATGATTTTGTTACCGCAGAGAACTGCCAAAAAAGCAGGATTTTCTTCAT
TGCATGGTCTCCCGACACTGCAAGAGTAAGAAGCAAGATGATTTATGCAA
GCTCCAAGGACAGGTTCAAGAGAGAGCTAGATGGCATTCAAGTGGAGCTG
CAGGCAACTGATCCATCTGAGATGGGTCTTGACGTATTTAAAGACCGTGC
CAACTAAATAAAGGCTCCTGATCTCAGCAATTGAGATTGTTTTTATCTTT
TGTGCTTTACCTAAAGGTGAAATGTTAATAGTTTGTGGCGGCAGCTTGAA
TCTAACTGAATTATGATGTTGGTTTGTTGTTCAAGTTTCACCGATGCAGT
ATTCTCG
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