CX069433

Overview
NameCX069433
Unique NameCX069433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.970e-38
Identity = 93/229 (40.61%), Postives = 136/229 (59.39%), Query Frame = -2
Query:  246 LSKYSGRRLMWQNSLGHCVLKAEFPKGKKE----------------------LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGK--VRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 848
            L+K+SGR+L  Q+ +G   L A F    K+                      L VS FQ  +LMLFN+ +K +F++I+  T I ++EL R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  540 LAKHSGRQLTLQHHMGSADLNATFYGAVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.491e-38
Identity = 94/229 (41.05%), Postives = 137/229 (59.83%), Query Frame = -2
Query:  246 LSKYSGRRLMWQNSLGHCVLKAEF--PKGKKE--------------------LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGK--VRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 848
            L+K+SGR+L  Q+ +G   L A F  P  K++                    L VS FQ  +LMLFN+  K +F++I+  T I ++EL R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  540 LAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.477e-38
Identity = 88/202 (43.56%), Postives = 121/202 (59.90%), Query Frame = -2
Query:  246 SKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 845
            +K   R+L W  SLG C +  +F +   EL VS +Q  VL+LFN   KLS+ +I     +  ++L R L SL+C K ++L K P  + V  +D+F FN  FT  + RIK+        V+E     E V +DR+Y +DAAIVRIMK+RKVL H  L++E  +QL    KP    +KKR+E LI R+YLERDK NP ++ YLA
Sbjct:  541 TKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQLNLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPL----PPVDERKKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 7.176e-37
Identity = 84/210 (40.00%), Postives = 126/210 (60.00%), Query Frame = -2
Query:  246 KYSGRRLMWQNSLGHCVLKAEFPKG-KKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACG--KVRVLQKLPKGRDVEDD--------DSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 842
            ++  R + W + L   V+ A F  G KKEL  +++QTV+L+LFN  +  +  +I + T I + E+ + + +L  G  K +VLQ++  G   + +        + FV N  FT    R+++  + +K  VEE     E V  DRQY++DAA+VRIMK RK L+H  L+TEL QQL+FP+  AD+KKR+ESLI+REY+ RD      YNY+A
Sbjct:  631 QHGNRNVKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQLRFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.814e-30
Identity = 88/232 (37.93%), Postives = 129/232 (55.60%), Query Frame = -2
Query:  246 KYSGRRLMWQNSLGHCVLKAEF---PKGK------------------------KELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKV--RVLQKLPKGRDVED-DDSFVFNEGFTAPLYRIKVNAIQMK-ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 842
            K++GR+L     LG+  +KA F   PK                          K L V+  Q ++L+ FN   ++S Q + D   I ++EL+R LQSLA GK   R+L +  KG+D  D  D F  N+ F + L R+KV  +  K E+  E   T ++V  DR+ +V+AAIVRIMK RK L+H  L+ E+ QQL  +F   P  +K+RIE+LI+REYL RD+++ + Y Y+A
Sbjct:  546 KHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL2_PONAB (Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 70/201 (34.83%), Postives = 121/201 (60.20%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELA-VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + L    +K  +  GK  +A V+ +Q  VL+ FN+++ +S+++++D+T + +KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  548 FSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL2_HUMAN (Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.959e-26
Identity = 70/201 (34.83%), Postives = 121/201 (60.20%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELA-VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + L    +K  +  GK  +A V+ +Q  VL+ FN+++ +S+++++D+T + +KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  548 FSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL2_MOUSE (Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26
Identity = 70/201 (34.83%), Postives = 121/201 (60.20%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELA-VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + L    +K  +  GK  +A V+ +Q  VL+ FN+++ +S+++++D+T + +KEL +T++SL    V+++    +  D++ + SF  N  F++   + K+     K+T +E   T   V +DR+  + AAIVRIMK RKVL H  LI E+  Q +    P  + +KK IE LID++Y+ER + +   Y+Y+A
Sbjct:  548 FSGRKLTWLHYLCTGEVKMNY-LGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSLL--DVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 70/205 (34.15%), Postives = 114/205 (55.61%), Query Frame = -2
Query:  246 SKYSGRRLMWQNSLGHCVLKAEFPKGKKE---LAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 845
            +++SGR+L W + L    LK ++ +  K    L  S +Q  VL+ FN  + L+ ++I+++T + D  L+ TL SLA  K+ +        ++     F  N+ F     +I +N   + +  EE  S  + V +DR+ Q+ AAIVRIMK RK L+H+ L+TE+  QL  +F  K   +KK I+ LI++EYL R +     Y+Y+A
Sbjct:  566 NQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSLAKSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = -2
Query:  246 SKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD---VEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKP--ADLKKRIESLIDREYLERDKNNPQIYNYLA 845
            S++SGR+L W   L    L     K +  L  S FQ  +L+ +N     + Q + D+T I+   L + LQ L   K+ VL+      D   ++ D       G+     R+ +N     E  +E  +T + + +DR+  + AAIVRIMK RKVL H  L+ E+  QL    KP    +KK I+ LI++EYLER       Y+YLA
Sbjct:  572 SRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
The following BLAST results are available for this feature:
BLAST of CX069433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CUL3B_XENLA4.970e-3840.61Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA6.491e-3841.05Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL1_ARATH8.477e-3843.56Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL4_CAEEL7.176e-3740.00Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL3_CAEEL3.814e-3037.93Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL2_PONAB1.959e-2634.83Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1[more]
CUL2_HUMAN1.959e-2634.83Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2[more]
CUL2_MOUSE2.558e-2634.83Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2[more]
CUL1_DICDI1.716e-2234.15Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL1_PONAB3.236e-2133.66Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D08-G16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069433 ID=CX069433; Name=CX069433; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTGAAAAAAATAAGTAATTTATTTCAAGAAGCTCACAAGTCCAG
AATGAGATGAAAGGTCTCAAAAGAAAGGCCGATTATACTTTACAATTACA
AATGTTGGGTTAAAAAACGAAAAAACAAAGAAGAAGGAAAAAAAAAAGGA
ACTACAACTTTCTGTACAGGGGAGAGATAACATTTGATTACGCCGCCATG
CAAAGAAAAACATCACATTTGTGTGTGTGACAAAATGGGGGACTAGGCCA
GGTAATTATATATCTGCGGATTGTTCTTGTCACGCTCCAGGTACTCCCTA
TCGATAAGGCTCTCAATCCTTTTCTTCAGATCGGCCGGCTTTATAGGAAA
TTTCAGCTGTTGGAAGAGTTCGGTTATTAGAAGTGTGTGACTCAACACTT
TTCTAGTCTTCATTATCCGAACAATGGCAGCATCCACCTGATATTGACGG
TCCTGAAATACTCTTTCAGTGGTGCTAGTGTTTTCTTCCACTGTTTCCTT
CATCTGTATAGCATTTACCTTAATACGATAAAGGGGAGCAGTAAATCCTT
CATTGAACACAAATGAATCATCATCCTCCACATCCCTTCCCTTTGGCAAC
TTTTGCAGGACGCGTACTTTACCGCAAGCAAGAGACTGTAGAGTCCTCCT
CAGTTCCTTATCTTCTATGCCAGTGGCATCCTTAATATCTTGAAAACTAA
GCTTTTGAGCATCGTTAAATAACATCAAAACGACTGTCTGAAATAGGGAA
ACTGCCAGCTCCTTTTTACCTTTAGGAAACTCAGCTTTCAACACACAGTG
ACCTAATGAATTTTGCCACATTAAGCGCCTTCCACTGTACTTGCTTAAA
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