CX069433

Overview
NameCX069433
Unique NameCX069433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.094e-16
Identity = 69/215 (32.09%), Postives = 112/215 (52.09%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACG---KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAIQMKETVEE--NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD--LKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + + + ++  +   G+ +L V+ FQ  VL  +N    +K+SF+++K AT + D ELRRTL SL      K +VL   P+    +D  +   F  N+ F+         R K+N I   +   E       E + Q R  +   AI++IMK RK +S+  L TEL + LK    P    +K++IE LI+ +Y+ RD+ +   + Y+A
Sbjct:  566 HSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDEADINTFIYMA 780          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 68/215 (31.63%), Postives = 111/215 (51.63%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACG---KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAIQMKETVEE--NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD--LKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + + + ++  +   G+ +L V+ FQ  VL  +N    +K+SF+++K AT + D ELRRTL SL      K +VL   P+    +D  +   F  N+ F+         R K+N I   +   E       E + Q R  +   AI++IMK RK +S+  L TEL + LK    P    +K+++E LI+  Y+ RD+ +   + Y+A
Sbjct:  566 HSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYDPQVNSPKDFTEGTLFSVNQDFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQMEWLIEHRYIRRDEADINTFIYMA 780          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.191e-15
Identity = 57/207 (27.54%), Postives = 108/207 (52.17%), Query Frame = -2
Query:  246 KYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLA-CGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAI-----QMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLI--TELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 842
            KY  R L W + L    +  +F  G  E++ S++  V+ +LF D ++L+  +I + T I   +++  + S++   + ++L+K     +++    F  N  F++P  ++KV  I       K       S+ +    +   ++ A IVRIMKT   LSH  L+  T    Q +  + P+ LK+ I+ LI++EY++R+ ++P  Y+YL+
Sbjct:  542 KYKERVLKWAHHLSVIEIGCQFNSGYYEISFSVYAGVIFLLFEDYEELTLGEIYELTHIPIDDVKSLVMSMSTIPRCKILKKSSSSGNMK----FSVNYFFSSPNRKVKVPVIACPLPSQKSDNLATASSVDTYDNEIVMELSAIIVRIMKTEGKLSHQQLLERTTKRTQSRLSLTPSILKRSIQLLIEKEYIQRNADDPSYYHYLS 744          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 4.526e-15
Identity = 67/215 (31.16%), Postives = 111/215 (51.63%), Query Frame = -2
Query:  246 YSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLACG---KVRVLQKLPK---GRDVEDDDSFVFNEGFT-----APLYRIKVNAIQMKETVEE--NTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPAD--LKKRIESLIDREYLERDKNNPQIYNYLA 839
            +SGR+L W + + + ++  +   G+ +L V+ FQ  VL  +N    +K+SF+++K AT + D ELRRTL SL      K +VL   P+    +D  +   F  N+ F+         R K+N I   +   E       E + Q R  +     ++IMK RK +S+  L TEL + LK    P    +K++IE LI+ +Y+ RD+++   + Y+A
Sbjct:  566 HSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTRKLYIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
BLAST of CX069433 vs. ExPASy Swiss-Prot
Match: CDC53_YEAST (Cell division control protein 53 OS=Saccharomyces cerevisiae GN=CDC53 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 66/231 (28.57%), Postives = 114/231 (49.35%), Query Frame = -2
Query:  246 KYSGRRLMWQNSLGHCVLKAEFPKGKK---ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACG-----KVRVLQKLPKGRD--VEDDDSFVFNEGFTAPLYRI------KVNAIQM--------------KETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQ--LKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 842
            K++GR L W   L    LKA+  K  +      V+LFQ  +L+L+NDA  L+ ++I++ T +       T+Q +A       K +++Q++P G D  V+ +  F  +  + A    I      K + +Q                + + E+    + +  +RQ  ++A IVRIMK ++ L HT L+ E   Q   +F  K + +K+ I+SLI + YL+R  ++ + Y YLA
Sbjct:  593 KHNGRILKWLWPLCRGELKADIGKPGRMPFNFTVTLFQMAILLLYNDADVLTLENIQEGTSL-------TIQHIAAAMVPFIKFKLIQQVPPGLDALVKPETQFKLSRPYKALKTNINFASGVKNDILQSLSGGGHDNHGNKLGNKRLTEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRG-DDGESYAYLA 815          
The following BLAST results are available for this feature:
BLAST of CX069433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CUL5_RAT4.094e-1632.09Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CUL5_MOUSE1.191e-1531.63Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL3_YEAST1.191e-1527.54Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]
CUL5_RABIT4.526e-1531.16Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CDC53_YEAST3.244e-1328.57Cell division control protein 53 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D08-G16-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069433 ID=CX069433; Name=CX069433; organism=Citrus sinensis; type=EST; length=849bp
TTTTTTTTGAAAAAAATAAGTAATTTATTTCAAGAAGCTCACAAGTCCAG
AATGAGATGAAAGGTCTCAAAAGAAAGGCCGATTATACTTTACAATTACA
AATGTTGGGTTAAAAAACGAAAAAACAAAGAAGAAGGAAAAAAAAAAGGA
ACTACAACTTTCTGTACAGGGGAGAGATAACATTTGATTACGCCGCCATG
CAAAGAAAAACATCACATTTGTGTGTGTGACAAAATGGGGGACTAGGCCA
GGTAATTATATATCTGCGGATTGTTCTTGTCACGCTCCAGGTACTCCCTA
TCGATAAGGCTCTCAATCCTTTTCTTCAGATCGGCCGGCTTTATAGGAAA
TTTCAGCTGTTGGAAGAGTTCGGTTATTAGAAGTGTGTGACTCAACACTT
TTCTAGTCTTCATTATCCGAACAATGGCAGCATCCACCTGATATTGACGG
TCCTGAAATACTCTTTCAGTGGTGCTAGTGTTTTCTTCCACTGTTTCCTT
CATCTGTATAGCATTTACCTTAATACGATAAAGGGGAGCAGTAAATCCTT
CATTGAACACAAATGAATCATCATCCTCCACATCCCTTCCCTTTGGCAAC
TTTTGCAGGACGCGTACTTTACCGCAAGCAAGAGACTGTAGAGTCCTCCT
CAGTTCCTTATCTTCTATGCCAGTGGCATCCTTAATATCTTGAAAACTAA
GCTTTTGAGCATCGTTAAATAACATCAAAACGACTGTCTGAAATAGGGAA
ACTGCCAGCTCCTTTTTACCTTTAGGAAACTCAGCTTTCAACACACAGTG
ACCTAATGAATTTTGCCACATTAAGCGCCTTCCACTGTACTTGCTTAAA
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