CX069432

Overview
NameCX069432
Unique NameCX069432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.775e-38
Identity = 83/193 (43.01%), Postives = 119/193 (61.66%), Query Frame = 3
Query:  273 EQSFSKNEAFCNTIKDAFEYLIN----LRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++SF  +E     ++ AFE  IN     ++  PA LIAK++D  LR G + +  + L+    ++L LFR+I  KD+FEA+YK D+AKRLLL KSAS   E  ++  LK  CGSQFT+ LEGMF+D+ +SKE   SF+ S  A        ++ V+VL+  YWP+YP   +RLP ++    D F++FYLSK  G
Sbjct:  347 DESFLHDETLSYAMRKAFETFINGAKGSQREAPARLIAKYIDYLLRVGEQASGGKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHSLEGMFRDVNISKEFTSSFRHSKAAHN---LHRDLYVNVLSQAYWPSYPESHIRLPDDMQQDLDCFEKFYLSKQVG 536          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.440e-38
Identity = 84/188 (44.68%), Postives = 125/188 (66.49%), Query Frame = 3
Query:  279 SFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQAR-TKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +F+ +  F N  +  FE  +N  +  P E +A ++D+ LR+G K  S+ E++  LD V++LFR++Q KDVFE ++K+ LAKRLLL KS S D EK++++KLKTECG QFT KLE MF+D EL   +  SF+   +A+ TK+   I++S+ VLT G WPT     V LP EL+V  ++F ++Y  K++G
Sbjct:  365 AFADDRDFKNRFQHDFETFLNSNRQSP-EFVALYMDDMLRSGLKCVSDAEMDNKLDNVMILFRYLQEKDVFEKYFKQYLAKRLLLDKSCSDDVEKALLAKLKTECGCQFTQKLENMFRDKELWLTLATSFRDWREAQPTKM--SIDISLRVLTAGVWPTVQCNPVVLPQELSVAYEMFTQYYTEKHTG 549          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 2.290e-35
Identity = 76/171 (44.44%), Postives = 110/171 (64.33%), Query Frame = 3
Query:  312 IKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEE-LEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFY 821
            + DAFE  +N + +R AELI+K     L + NK  S++  L+  +D+ +VLFR+++GKDVFEA+YK+ LAKRL L +SAS+DAEK ++ KLKTECGS FT KLEGMFKD++ S+     F Q  +   K       +  V+T  YWPTY   ++ +P E+      +++FY
Sbjct:  460 LSDAFESFVNKQVDRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYLEHMNK--EKANFTARVITPEYWPTYDTYEINIPKEMRDTLTDYQDFY 628          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.103e-35
Identity = 77/188 (40.96%), Postives = 119/188 (63.30%), Query Frame = 3
Query:  276 QSFSKNEAFCNTIKDAFEYLIN--LRQNRPAELIAKFLDEKLR-AGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSK 830
            + F  +  F   +K+AFE   N  +  +  AEL+A F D  L+  G++  S+E +E TL+KV+ L  +I  KD+F  FY+K LA+RLL  +SA+ D E+S+++KLK +CG QFT+K+EGM  D+ L++E   SF+    +      GI+++V VLTTG+WP+Y   D+ LP E+    ++FK FY +K
Sbjct:  355 ECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETK 542          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.096e-32
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 3
Query:  351 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++  EL+A++ D  L+  +K   E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+   SAS DAE SMISKLK  CG ++T+KL+ MF+DI +SK++NE FK+        P  ++ S+ VL++G WP        LP EL      F  FY S++SG
Sbjct:  416 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSG 576          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.096e-32
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 3
Query:  351 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++  EL+A++ D  L+  +K   E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+   SAS DAE SMISKLK  CG ++T+KL+ MF+DI +SK++NE FK+        P  ++ S+ VL++G WP        LP EL      F  FY S++SG
Sbjct:  416 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSG 576          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.096e-32
Identity = 73/163 (44.79%), Postives = 105/163 (64.42%), Query Frame = 3
Query:  351 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++  EL+A++ D  L+  +K   E ELE TL++V+V+F++I+ KDVF+ FY K LAKRL+   SAS DAE SMISKLK  CG ++T+KL+ MF+DI +SK++NE FK+        P  ++ S+ VL++G WP        LP EL      F  FY S++SG
Sbjct:  416 SKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKK--HLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSG 576          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.896e-32
Identity = 78/194 (40.21%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  279 SFSKNEAFCNTIKDAFEYLINLR------QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +F  +  F  ++  AF  L+N         +R  EL+AK+ D  LR  NK    +++E  L  ++++FR+++ KDVF+ FY K LAKRL+ G S S DAE SM+SKLK  CG ++T+KL+ MF+DI LS+EI E+F Q  Q+R      I+ S  VL T +WP  P  ++  LP EL    + F+ +Y S ++G
Sbjct:  381 AFHGDTDFTKSLDTAFRELVNRNVVCQRSSSRSPELLAKYADSILRKSNKNVDIDDVEDCLSSIIIIFRYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEVCGFEYTSKLQRMFQDISLSQEITEAFWQLPQSRA---GNIDFSALVLGTSFWPLSPNNVNFHLPEELVPLYEGFQNYYYSCHNG 571          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.897e-30
Identity = 76/196 (38.78%), Postives = 116/196 (59.18%), Query Frame = 3
Query:  261 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVR--LPHELNVYQDIFKEFYLSKYSG 839
            +TI   +   + +  N++ DAF   ++    R  E I+ F+D+ L+   +   E  +E TL   + LFRFI  KDVFE +YK  LAKRLL  +S S DAE  MIS+LK E G+ FT KLEGMF D+ LS+E+ + +K +S  ++  P+ ++++V +L + +WP    P  ++   P  L    D F +FYLSK++G
Sbjct:  390 NTIISTTMDADRSILNSLSDAFVTFVD-GYTRAPEYISLFIDDNLKKDARKAIEGSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGNVFTQKLEGMFNDMNLSQELLQEYKHNSALQSAKPA-LDLNVSILASTFWPIDLSPHKIKCNFPKVLLAQIDQFTDFYLSKHTG 583          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.101e-29
Identity = 66/164 (40.24%), Postives = 103/164 (62.80%), Query Frame = 3
Query:  351 NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPP-MDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++  EL+A+F D  L+       E E+E  L+ V+++F++I+ KDVF+ FY K LAKRL+ G S S D E +MI KLK+ CG ++T+KL+ MF D+ LS+E+ + F    +   +    I+ SV VL TG WP  PP  +  +P EL   + +F++FY +++SG
Sbjct:  407 SKSPELLARFTDFLLKKSPNNPEESEMEQLLNDVMIVFKYIEDKDVFQDFYSKMLAKRLIHGTSTSEDLEGTMIGKLKSTCGYEYTSKLQRMFTDMSLSRELLDRFNNHIEQVERSSLNIDFSVLVLATGSWPLQPPSTNFSIPKELQACEQLFQKFYQNQHSG 570          
The following BLAST results are available for this feature:
BLAST of CX069432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CUL4_SCHPO3.775e-3843.01Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL3_CAEEL6.440e-3844.68Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL4_CAEEL2.290e-3544.44Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]
CUL1_ARATH5.103e-3540.96Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL1_PONAB3.096e-3244.79Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE3.096e-3244.79Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN3.096e-3244.79Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL1_SCHPO6.896e-3240.21Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL3_SCHPO2.897e-3038.78Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL1_DICDI1.101e-2940.24Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D08-G16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069432 ID=CX069432; Name=CX069432; organism=Citrus sinensis; type=EST; length=840bp
CTTCGGCAATGAAGAAGGCCAAGTCCCAAGCCGTGGCCTGCTCTGTGGAC
ACCGCCAACAAGAACGGTCTCCACCACGACAACGACGCCGTTTTCGATCC
CTCTTCTATTTCTCTCGATGACGATCTTAAGCCCGACGAACCCCGACAAC
AAGCCGCCGCCAATTTATCCCGCAAAAAAGCCCAGCCCCCTCAGCCCGCC
AAAAAACTTGTCATCAAGCTCCTCAAAGCTAAACCCACACTGCCTACAAA
TTTTGAGGAGGATACAATATGGGAACAAAGCTTCTCAAAGAATGAAGCAT
TTTGCAACACAATAAAGGACGCATTTGAGTATCTAATTAATCTTCGTCAG
AACCGACCTGCTGAGCTGATTGCAAAGTTTCTGGATGAGAAGCTTCGGGC
TGGAAATAAGGGTACTTCAGAAGAGGAATTGGAGGGTACACTTGATAAAG
TTCTAGTTTTATTCAGGTTTATTCAGGGTAAAGATGTGTTTGAAGCATTC
TATAAAAAGGATCTTGCAAAAAGGTTACTGTTGGGGAAGAGTGCTTCCAT
TGATGCAGAGAAATCTATGATTTCCAAGCTAAAGACTGAATGTGGCAGCC
AATTTACAAACAAACTTGAAGGGATGTTCAAGGATATTGAATTATCAAAG
GAGATAAATGAGTCCTTCAAACAGTCATCCCAGGCCAGGACAAAACTCCC
ATCAGGGATTGAGATGAGTGTCCATGTCTTGACAACCGGGTACTGGCCCA
CATATCCCCCCATGGATGTTAGGCTTCCTCATGAACTGAATGTCTATCAG
GACATTTTTAAGGAGTTCTATTTAAGCAAGTACAGTGGAA
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