CX069432

Overview
NameCX069432
Unique NameCX069432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  348 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +++  EL+A + D  LR    +K  + EE+E  L +VL++ +++Q KDVF  ++K  L +RL+L  SA  + E++M+  L+ E G  + + NKL  MF+DI++S+++N++FK+  +          +++ +L  G W  +   + V LP EL       +EFY   +SG
Sbjct:  401 ESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSG 568          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  348 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +++  EL+A + D  LR    +K  + EE+E  L +VL++ +++Q KDVF  ++K  L +RL+L  SA  + E++M+  L+ E G  + + NKL  MF+DI++S+++N++FK+  +          +++ +L  G W  +   + V LP EL       +EFY   +SG
Sbjct:  401 ESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSG 568          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  348 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +++  EL+A + D  LR    +K  + EE+E  L +VL++ +++Q KDVF  ++K  L +RL+L  SA  + E++M+  L+ E G  + + NKL  MF+DI++S+++N++FK+  +          +++ +L  G W  +   + V LP EL       +EFY   +SG
Sbjct:  401 ESKCPELLANYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSG 568          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.823e-16
Identity = 54/169 (31.95%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  348 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECG--SQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            +++  EL+A + D  LR    +K  + EE+E  L +VL++ +++Q KDVF  ++K  L +RL+L  SA  + E++M+  L+ E G  + + NKL  MF+DI++S+++N++FK+  +          +++ +L  G W  +   + V LP EL       +EFY   +SG
Sbjct:  401 ESKCPELLAIYCDMLLRKTPLSKKLTSEEIEAKLKEVLLVLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEEFYKKNHSG 568          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 64/204 (31.37%), Postives = 100/204 (49.02%), Query Frame = 3
Query:  273 EQSFSKNEAFCNTIKDAFEYLIN---------LRQNRPAELIAKFLDEKLRAGNKGTSEE-ELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYW-----PTYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            ++ +  +  F   +  +F  L+N          +++    +++KF D+ LR G    S+E ELE  L + + LF+++  KD+F   Y+K L+KRL+   SAS DAE  MI+KLK   G  +  KL  M  D+ L K+IN +F Q+      L    + + +VLT G W      T  P   + P E+      F+ FY   Y G
Sbjct:  346 KECYGNDTDFTTAMDKSFSILVNENPASYDPKKKESNIPVVLSKFCDQILRKGPHHISDEAELEKKLTEAVCLFKYLPDKDIFMLNYQKMLSKRLVEDLSASEDAETLMINKLKNYQGFDYCTKLTRMITDMRLCKDININF-QNHLNEKSLTLPYQFNFYVLTNGSWTLTNKQTATPF--KPPSEMLSSITYFESFYKKSYQG 546          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CDC53_YEAST (Cell division control protein 53 OS=Saccharomyces cerevisiae GN=CDC53 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 54/209 (25.84%), Postives = 104/209 (49.76%), Query Frame = 3
Query:  267 IWEQSFSKNEAFCNTIKDAFEYLINLRQ------------NRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESF-----KQSSQARTKLPSGIEMSVHVLTTGYWP-TYPPMDVRLPHELNVYQDIFKEFYLSKYSG 839
            I+ +SF  +      + +A    IN+ +            ++ +E++AK+ D  L+   K     ++    + ++ +F+++  KD FE  Y++  AKRL+ G S S + E+++I +L+     ++T K+  MF+DI LSK + + F      +   ++ K P   ++   VL    WP +Y  ++ +LP EL    +  KE Y  K++G
Sbjct:  393 IFNESFPDDIPLAKALDNACGAFININEFALPAGSPKSATSKTSEMLAKYSDILLKKATKPEVASDMSD--EDIITIFKYLTDKDAFETHYRRLFAKRLIHGTSTSAEDEENIIQRLQAANSMEYTGKITKMFQDIRLSKILEDDFAVALKNEPDYSKAKYP---DLQPFVLAENMWPFSYQEVEFKLPKELVPSHEKLKESYSQKHNG 596          
BLAST of CX069432 vs. ExPASy Swiss-Prot
Match: CUL3_YEAST (Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.766e-11
Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  318 DAFEYLINLRQNRPAELIAKFLDEKL-RAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWP--TYPPMD--VRLPHELNVYQDIFKEFYLSKY 833
            D F    +     P+E ++ ++D  + R   K     +++  L     L   +  KD+FE  YKK L++RLL  +S  ++ EK M+  +K   G+ FT+KLE M +DI LS E+ ++F+ S+    +    +  +  VLT   WP  +  P+D  + LP  ++     F+ +Y  KY
Sbjct:  371 DVFSMYFSKEGALPSEYLSTYVDHCMKRTKEKDAEIVKIKQDLLDSTKLIGLLTEKDIFEKIYKKQLSRRLLQQRSL-VEIEKWMVQMIKKVLGTFFTSKLEIMLRDISLSSEMYQAFQHSTINSIEY---LSFAPQVLTRTSWPFQSTNPIDEGISLPPRMSQILAGFEGYYSLKY 543          
The following BLAST results are available for this feature:
BLAST of CX069432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
CUL5_RABIT8.184e-1731.95Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_MOUSE8.184e-1731.95Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_HUMAN8.184e-1731.95Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_PONAB1.823e-1631.95Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CUL5_DICDI2.381e-1631.37Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CDC53_YEAST3.110e-1625.84Cell division control protein 53 OS=Saccharomyces ... [more]
CUL3_YEAST1.766e-1129.38Cullin-3 OS=Saccharomyces cerevisiae GN=CUL3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_10D08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-10D08-G16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069432 ID=CX069432; Name=CX069432; organism=Citrus sinensis; type=EST; length=840bp
CTTCGGCAATGAAGAAGGCCAAGTCCCAAGCCGTGGCCTGCTCTGTGGAC
ACCGCCAACAAGAACGGTCTCCACCACGACAACGACGCCGTTTTCGATCC
CTCTTCTATTTCTCTCGATGACGATCTTAAGCCCGACGAACCCCGACAAC
AAGCCGCCGCCAATTTATCCCGCAAAAAAGCCCAGCCCCCTCAGCCCGCC
AAAAAACTTGTCATCAAGCTCCTCAAAGCTAAACCCACACTGCCTACAAA
TTTTGAGGAGGATACAATATGGGAACAAAGCTTCTCAAAGAATGAAGCAT
TTTGCAACACAATAAAGGACGCATTTGAGTATCTAATTAATCTTCGTCAG
AACCGACCTGCTGAGCTGATTGCAAAGTTTCTGGATGAGAAGCTTCGGGC
TGGAAATAAGGGTACTTCAGAAGAGGAATTGGAGGGTACACTTGATAAAG
TTCTAGTTTTATTCAGGTTTATTCAGGGTAAAGATGTGTTTGAAGCATTC
TATAAAAAGGATCTTGCAAAAAGGTTACTGTTGGGGAAGAGTGCTTCCAT
TGATGCAGAGAAATCTATGATTTCCAAGCTAAAGACTGAATGTGGCAGCC
AATTTACAAACAAACTTGAAGGGATGTTCAAGGATATTGAATTATCAAAG
GAGATAAATGAGTCCTTCAAACAGTCATCCCAGGCCAGGACAAAACTCCC
ATCAGGGATTGAGATGAGTGTCCATGTCTTGACAACCGGGTACTGGCCCA
CATATCCCCCCATGGATGTTAGGCTTCCTCATGAACTGAATGTCTATCAG
GACATTTTTAAGGAGTTCTATTTAAGCAAGTACAGTGGAA
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